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Sample GSM265073 Query DataSets for GSM265073
Status Public on Sep 30, 2008
Title Regulation of the RPE (retinal pigment epithelium) transcriptome by the neural retina (E7CM-SER-SER-2)
Sample type RNA
 
Source name retinal pigment epithelium
Organism Gallus gallus
Characteristics E7 RPE in basal medium supplemented with 2% fetal bovine serum and retinal conditioned medium
Extracted molecule total RNA
Extraction protocol RNeasy Protect^ kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol standard
Scan protocol standard
Description N/A
Data processing signal value generated from global scaling
 
Submission date Feb 12, 2008
Last update date Sep 30, 2008
Contact name Lawrence J Rizzolo
E-mail(s) [email protected]
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE10538 Regulation of the early embryonic RPE (retinal pigment epithelium) transcriptome by the neural retina

Data table header descriptions
ID_REF
VALUE MAS5 value
ABS_CALL present/absent
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 281.835 P 0.000662269
AFFX-BioB-M_at 372.781 P 5.16732e-05
AFFX-BioB-3_at 301.327 P 6.02111e-05
AFFX-BioC-5_at 972.202 P 6.02111e-05
AFFX-BioC-3_at 1004.73 P 4.42873e-05
AFFX-BioDn-5_at 2033.86 P 4.42873e-05
AFFX-BioDn-3_at 4966.39 P 0.000126798
AFFX-CreX-5_at 12142.4 P 5.16732e-05
AFFX-CreX-3_at 14945.2 P 4.42873e-05
AFFX-DapX-5_at 9.38308 A 0.41138
AFFX-DapX-M_at 30.292 A 0.313723
AFFX-DapX-3_at 5.16995 A 0.81489
AFFX-LysX-5_at 2.70844 A 0.843268
AFFX-LysX-M_at 13.3153 A 0.868639
AFFX-LysX-3_at 3.42335 A 0.672921
AFFX-PheX-5_at 3.94346 A 0.860518
AFFX-PheX-M_at 2.67461 A 0.941556
AFFX-PheX-3_at 16.5992 A 0.51489
AFFX-ThrX-5_at 6.84269 A 0.737173
AFFX-ThrX-M_at 26.2382 A 0.262827

Total number of rows: 38535

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM265073.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM265073.CHP.gz 207.2 Kb (ftp)(http) CHP
Processed data included within Sample table

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