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Sample GSM265374 Query DataSets for GSM265374
Status Public on Sep 30, 2008
Title Regulation of the RPE (retinal pigment epithelium) transcriptome by the neural retina (E7RCSF3-3)
Sample type RNA
 
Source name retinal pigment epithelium
Organism Gallus gallus
Characteristics E7 RPE in basal medium supplemented with retinal conditioned medium
Extracted molecule total RNA
Extraction protocol RNeasy Protect^ kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol standard
Scan protocol standard
Description N/A
Data processing signal value generated from global scaling
 
Submission date Feb 12, 2008
Last update date Sep 30, 2008
Contact name Lawrence J Rizzolo
E-mail(s) [email protected]
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE10538 Regulation of the early embryonic RPE (retinal pigment epithelium) transcriptome by the neural retina

Data table header descriptions
ID_REF
VALUE MAS5 value
ABS_CALL present/absent
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 438.474 P 0.000753643
AFFX-BioB-M_at 628.997 P 4.42873e-05
AFFX-BioB-3_at 418.628 P 7.00668e-05
AFFX-BioC-5_at 1439.37 P 5.16732e-05
AFFX-BioC-3_at 1383.36 P 4.42873e-05
AFFX-BioDn-5_at 3063.18 P 4.42873e-05
AFFX-BioDn-3_at 5949.07 P 7.00668e-05
AFFX-CreX-5_at 16454.4 P 5.16732e-05
AFFX-CreX-3_at 20815.6 P 4.42873e-05
AFFX-DapX-5_at 3.79046 A 0.860518
AFFX-DapX-M_at 31.4294 A 0.313723
AFFX-DapX-3_at 4.76218 A 0.98333
AFFX-LysX-5_at 11.2669 A 0.275146
AFFX-LysX-M_at 10.8331 A 0.910522
AFFX-LysX-3_at 2.2027 A 0.834139
AFFX-PheX-5_at 4.10987 A 0.891021
AFFX-PheX-M_at 10.7469 A 0.724854
AFFX-PheX-3_at 31.2342 A 0.470241
AFFX-ThrX-5_at 22.6583 A 0.559354
AFFX-ThrX-M_at 5.94581 A 0.760937

Total number of rows: 38535

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM265374.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM265374.CHP.gz 207.3 Kb (ftp)(http) CHP
Processed data included within Sample table

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