NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM27160 Query DataSets for GSM27160
Status Public on Nov 05, 2004
Title HNF6_2+
Sample type RNA
 
Source name INS-1 cell line #2 with induced HNF6
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from tet-induced INS-1 cell line #2 containing hepatocyte nuclear factor-6 (HNF6; onecut1).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF6
Keywords = onecut1
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) [email protected]
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1589 Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE �signal�, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 241.9 P 0.01667
AFFX-BioB-M_at 442.7 P 0.000509
AFFX-BioB-3_at 144.4 P 0.009337
AFFX-BioC-5_at 627.4 P 0.00007
AFFX-BioC-3_at 420.4 P 0.000052
AFFX-BioDn-5_at 370.4 P 0.003212
AFFX-BioDn-3_at 3017 P 0.000127
AFFX-CreX-5_at 6204.3 P 0.000044
AFFX-CreX-3_at 11915.7 P 0.000044
AFFX-DapX-5_at 77.8 P 0.002556
AFFX-DapX-M_at 182.4 P 0.00762
AFFX-DapX-3_at 222.5 P 0.001248
AFFX-LysX-5_at 429.4 P 0.000081
AFFX-LysX-M_at 505.1 P 0.000052
AFFX-LysX-3_at 970.2 P 0.00006
AFFX-PheX-5_at 2587.3 P 0.000044
AFFX-PheX-M_at 3159.1 P 0.000044
AFFX-PheX-3_at 4039.4 P 0.000044
AFFX-ThrX-5_at 333.7 P 0.000052
AFFX-ThrX-M_at 587.7 P 0.000052

Total number of rows: 15923

Table truncated, full table size 431 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap