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| Status |
Public on Dec 01, 2008 |
| Title |
Replicate 1 for T47D1 breast cell line |
| Sample type |
RNA |
| |
|
| Source name |
Human cell line
|
| Organism |
Homo sapiens |
| Characteristics |
No treatment. See ATCC/DSMZ for cell line details.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
| Label |
Biotin
|
| Label protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
| |
|
| Hybridization protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
| Scan protocol |
Affymetrix standard protocols. See Clin Cancer Res 2005;11(24) December 15, 2005
|
| Description |
Cell line, RPMI1640, 10 %FBS, 2mM L-glutamine, 10mM HEPES
|
| Data processing |
gcRMA (justGCRMA in R/Bioconductor)
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| |
|
| Submission date |
Mar 19, 2008 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Alex T. Adai |
| E-mail(s) |
[email protected]
|
| Organization name |
Genentech
|
| Department |
Oncology Diagnostics
|
| Lab |
David Dornan
|
| Street address |
X
|
| City |
X |
| State/province |
X |
| ZIP/Postal code |
X |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE10890 |
mRNA Breast Cancer Cell Line Profiles |
|
| Relations |
| Reanalyzed by |
GSM320612 |
| Reanalyzed by |
GSE119087 |
| Data table header descriptions |
| ID_REF |
Affymetrix probeset id |
| VALUE |
Log base 2 of signal intensity (gcRMA normalized) |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
11.9486369462963 |
| 1053_at |
10.8845494504913 |
| 117_at |
2.88230066331166 |
| 121_at |
3.49949618213632 |
| 1255_g_at |
1.99466705041002 |
| 1294_at |
2.09836463706991 |
| 1316_at |
2.72295442943172 |
| 1320_at |
3.21922708891297 |
| 1405_i_at |
3.88533474202409 |
| 1431_at |
2.99630956822666 |
| 1438_at |
7.17169638326838 |
| 1487_at |
8.9240696457478 |
| 1494_f_at |
2.45286906767459 |
| 1552256_a_at |
11.1497220230322 |
| 1552257_a_at |
8.90143005207034 |
| 1552258_at |
2.40486047054054 |
| 1552261_at |
2.86290741854105 |
| 1552263_at |
5.04475121906632 |
| 1552264_a_at |
8.37031015633695 |
| 1552266_at |
3.02138990380785 |
Total number of rows: 54675
Table truncated, full table size 1480 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM276016.cel.gz |
5.0 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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