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GEO accession:
Sample GSM2907
Query DataSets for GSM2907
Status
Public on Dec 06, 2002
Title
M7TW00121356
Sample type
RNA
Source name
stomach
Organism
Mus musculus
Extracted molecule
total RNA
Extraction protocol
as per manufacturer's instructions
Label protocol
as per manufacturer's instructions
Hybridization protocol
as per manufacturer's instructions
Scan protocol
as per manufacturer's instructions
Description
Large-scale analysis of the mouse transcriptome.
Stomach
C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 240.76 Stdv: 8.41 Min: 228.93 Max: 253.64
Submission date
Nov 22, 2002
Last update date
Dec 14, 2006
Contact name
John R Walker
E-mail(s)
[email protected]
Phone
858-812-1636
Organization name
Genomics Institute of the Novartis Research Foundation
Lab
Genetics Core
Street address
10675 John Jay Hopkins
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL32
Series (1)
GSE97
Large-scale analysis of the mouse transcriptome
Data table header descriptions
ID_REF
Affymetrix Probe Set Identifier
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs
Number of probe set specific probe pairs on the array
Pairs_Used
Pairs used
Pairs_InAvg
Pos_Fraction
Positive/Pairs_Used
Log_Avg
Log average
PM_Excess
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg
Positive/Negative
VALUE
Average Difference Intensity
ABS_CALL
Whether a probe set is present, marginal, or absent
Data table
ID_REF
Positive
Negative
Pairs
Pairs_Used
Pairs_InAvg
Pos_Fraction
Log_Avg
PM_Excess
MM_Excess
Pos/Neg
VALUE
ABS_CALL
100001_at
7
3
16
16
15
0.44
0.80
0
0
2.33
-215.21
A
100002_at
7
2
16
16
14
0.44
1.09
0
0
3.50
85.25
M
100003_at
4
3
16
16
15
0.25
-0.27
0
0
1.33
-150.70
A
100004_at
3
5
16
16
16
0.19
0.32
0
0
0.60
38.12
A
100005_at
7
1
16
16
14
0.44
1.40
0
0
7.00
937.60
P
100006_at
3
2
16
16
16
0.19
0.29
0
0
1.50
320.45
A
100007_at
6
0
16
16
15
0.38
1.37
0
0
Undef
643.29
P
100009_r_at
9
0
16
16
16
0.56
2.07
0
0
Undef
92.25
P
100010_at
4
1
16
16
15
0.25
0.79
0
0
4.00
282.61
A
100011_at
12
1
16
16
14
0.75
3.49
0
0
12.00
683.07
P
100012_at
5
7
16
16
16
0.31
0.11
0
0
0.71
149.39
A
100013_at
4
6
16
16
14
0.25
-0.42
0
0
0.67
-252.66
A
100014_at
2
1
16
16
14
0.12
0.50
0
0
2.00
19.45
A
100015_at
9
1
16
16
13
0.56
1.14
0
0
9.00
21.20
P
100016_at
5
4
16
16
14
0.31
0.17
0
0
1.25
218.10
A
100017_at
6
2
16
16
14
0.38
1.74
0
0
3.00
470.19
P
100018_at
4
3
16
16
15
0.25
-0.19
0
0
1.33
-500.09
A
100019_at
3
6
16
16
16
0.19
-0.58
0
0
0.50
-370.72
A
100020_at
11
0
16
16
16
0.69
4.19
0
0
Undef
2138.42
P
100021_at
6
5
16
16
15
0.38
0.36
0
0
1.20
156.06
A
Total number of rows:
10043
Table truncated, full table size
502 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM2907.CEL.gz
3.1 Mb
(ftp)
(http)
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