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Sample GSM296815 Query DataSets for GSM296815
Status Public on Jun 07, 2008
Title control blastocyst, replicate 2
Sample type RNA
 
Source name control blastocyst
Organism Mus musculus
Characteristics control mouse blastocyst
Extracted molecule total RNA
Extraction protocol Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label biotin
Label protocol total RNA was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
 
Hybridization protocol cRNA was fragmented following the Affymetrix protocol, and hybridized to the Affymetrix GeneChip Mouse Genome 430 2.0 arrays
Scan protocol standard Affymetrix procedures
Description Gene expression data from normal mouse blastocyst
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 04, 2008
Last update date Aug 28, 2018
Contact name Hua Pan
E-mail(s) [email protected]
Organization name University of Pennsylvania
Department Department of Biology
Street address 415 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1261
Series (1)
GSE11687 Ca2+ oscillatory pattern in fertilized mouse eggs affects gene expression and development to term.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL absence/presence
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 98.1964 A 0.0780018
AFFX-BioB-M_at 75.1367 P 0.00499819
AFFX-BioB-3_at 39.4113 A 0.39692
AFFX-BioC-5_at 109.766 P 0.00499819
AFFX-BioC-3_at 119.232 P 0.0032123
AFFX-BioDn-5_at 397.275 P 9.4506e-05
AFFX-BioDn-3_at 1106.14 P 0.00141043
AFFX-CreX-5_at 3001.46 P 6.02111e-05
AFFX-CreX-3_at 2708.31 P 4.42873e-05
AFFX-DapX-5_at 25.5871 A 0.0894781
AFFX-DapX-M_at 17.8594 A 0.51489
AFFX-DapX-3_at 11.655 A 0.41138
AFFX-LysX-5_at 8.54689 A 0.440646
AFFX-LysX-M_at 5.2552 A 0.783476
AFFX-LysX-3_at 2.4331 A 0.574038
AFFX-PheX-5_at 2.92642 A 0.897835
AFFX-PheX-M_at 1.95358 A 0.932322
AFFX-PheX-3_at 8.02974 A 0.659339
AFFX-ThrX-5_at 11.3174 A 0.772364
AFFX-ThrX-M_at 1.19353 A 0.904333

Total number of rows: 45101

Table truncated, full table size 1357 Kbytes.




Supplementary file Size Download File type/resource
GSM296815.cel.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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