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Sample GSM300944 Query DataSets for GSM300944
Status Public on Aug 11, 2008
Title SLE125_04_0604
Sample type RNA
 
Source name SLE125_04_0604
Organism Homo sapiens
Characteristics Age: 12 yrs, when sample taken
Gender: F
Ethnicity: Hispanic or Latino
Race: (Race Not Reported)
Illness: SLE
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description A female subject diagnosed with SLE where age 12 yrs, when sample taken. Sample used in Longitudinal study.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jun 26, 2008
Last update date Aug 11, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL96
Series (2)
GSE11907 A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
GSE11909 A modular analysis framework for the discovery of biomarkers of Systemic Lupus Erythematosus

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 194.1 P
AFFX-BioB-M_at 460 P
AFFX-BioB-3_at 169.7 P
AFFX-BioC-5_at 715.2 P
AFFX-BioC-3_at 826.5 P
AFFX-BioDn-5_at 1487.7 P
AFFX-BioDn-3_at 3517.8 P
AFFX-CreX-5_at 7955.2 P
AFFX-CreX-3_at 14840.3 P
AFFX-DapX-5_at 13.3 A
AFFX-DapX-M_at 8.3 A
AFFX-DapX-3_at 5.2 A
AFFX-LysX-5_at 2.6 A
AFFX-LysX-M_at 10 A
AFFX-LysX-3_at 12.6 A
AFFX-PheX-5_at 2 A
AFFX-PheX-M_at 1.7 A
AFFX-PheX-3_at 54.4 A
AFFX-ThrX-5_at 7.7 A
AFFX-ThrX-M_at 20.3 A

Total number of rows: 22283

Table truncated, full table size 398 Kbytes.




Supplementary file Size Download File type/resource
GSM300944.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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