|
| Status |
Public on Aug 11, 2008 |
| Title |
MEL 40 PRE U133B.txt~melanoma-AB-chip |
| Sample type |
RNA |
| |
|
| Source name |
MEL 40 PRE U133B, melanoma-AB-chip
|
| Organism |
Homo sapiens |
| Characteristics |
Age: 43 yrs, when sample taken.
Gender: F
Ethnicity: (Ethnicity Not Reported)
Race: (Race Not Reported)
Illness: Melanoma M1c
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
EukGE-WS2
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
|
| Description |
A female subject diagnosed with Melanoma M1c where age 43 yrs, when sample taken.
CEL file not available for this chip (corrupted)
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Jun 30, 2008 |
| Last update date |
Aug 11, 2008 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
[email protected]
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL97 |
| Series (2) |
| GSE11907 |
A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus |
| GSE11908 |
Construction of a modular analysis framework for blood Genomics Studies |
|
