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Sample GSM3024716 Query DataSets for GSM3024716
Status Public on Jul 25, 2019
Title Z3U4D
Sample type RNA
 
Source name leukocyte transcriptome
Organism Homo sapiens
Characteristics cell type: leukocyte
gender: M
age (months): 33.38
diagnosis: ASD
ados_coso: 10
Extracted molecule total RNA
Extraction protocol four to six milliliters of blood were collected into ethylenediaminetetraacetic-coated tubes from all subjects. Total RNA was extracted following standard procedures and manufacturer’s instructions (Ambion)
Label biotin
Label protocol Standard Illumina labeling protocol
 
Hybridization protocol Standard Illumina hyb protocol
Scan protocol Standard Illumina scanning protocol
Description replicate1
Data processing Outlier samples are removed. Expression data are log2 transformed and quantile normalized for probes with detection p-value <0.05 (standard settings).
 
Submission date Feb 27, 2018
Last update date Jul 25, 2019
Contact name Vahid H Gazestani
E-mail(s) [email protected]
Organization name UCSD
Street address 8110 La Jolla Shores Drive, Suite 201
City La Jolla
State/province California
ZIP/Postal code 92093
Country USA
 
Platform ID GPL10558
Series (2)
GSE111175 Perturbations of PI3K/AKT, RAS/ERK, WNT/B-catenin networks in leukocytes are linked to ASD genetics and fetal origins of autism
GSE111176 Transcriptional organization of autism spectrum disorder

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1762337 5.894536342
ILMN_2055271 6.062036712
ILMN_1736007 6.203200468
ILMN_2383229 5.726121906
ILMN_1806310 5.855759405
ILMN_1779670 5.744126542
ILMN_1653355 5.925237981
ILMN_1717783 5.748655152
ILMN_1705025 5.991655717
ILMN_1814316 5.898906044
ILMN_2359168 5.668357232
ILMN_1731507 5.754736383
ILMN_1787689 5.892362288
ILMN_3241953 6.551567891
ILMN_1745607 5.926745147
ILMN_2136495 5.679308748
ILMN_1668111 5.986520133
ILMN_2295559 5.605860005
ILMN_1735045 5.744584444
ILMN_1680754 6.197629372

Total number of rows: 47323

Table truncated, full table size 1150 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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