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Sample GSM30834 Query DataSets for GSM30834
Status Public on Oct 12, 2004
Title RD02D003
Sample type RNA
 
Source name whole head
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Whole heads of Rh1-GAL4/P{UAS-dPABP-FLAG} flie were seperated from bodies using liquid nitrogen freezing and sieve (0.710 mm) seperation. About 100 seperated whole fly heads were homoginized in 0.5 ml Trizol (Invitrogen). Then 0.1 ml chloroform was added. After vigorous vortexing and centrifugation at 12,000 g for 15 minuntes, 0.28 ml of the aquous phase sample was transfered to a new tube, mixed with 0.25 ml 2-isopropanol, then loaded on a RNeasy column (Qiagen), the RNA sample was further purified by the RNeasy kit. Targets were produced using standard Affymetrix procedures from about 10 ug of total RNA. 10 ug cRNA was used for hybridization.
This sample is whole head sample 3 of Rh1-GAL4/P{UAS-hPABP-FLAG}.
Keywords = Drosophila
Keywords = mRNA tagging
Keywords = photoreceptor cell-specific genes
 
Submission date Sep 21, 2004
Last update date May 27, 2005
Contact name Zhiyong Yang
E-mail(s) [email protected]
Phone 713-7988168
Organization name Baylor College of Medicine
Street address
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL72
Series (1)
GSE1790 Isolation of mRNA from fly photoreceptor cells by mRNA tagging

Data table header descriptions
ID_REF gene specific probe set
VALUE the abundance of a transcript measured as model-based expression index by PM-only model using dChip (version 1.3) program
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SE standard error

Data table
ID_REF VALUE ABS_CALL SE
AFFX-MurIL2_at 64.0319 A 0.963233
AFFX-MurIL10_at 86.0794 A 3.61018
AFFX-MurIL4_at 45.3885 A 1.86514
AFFX-MurFAS_at 16.6619 A 1.35237
AFFX-BioB-5_at 231.058 P 11.199
AFFX-BioB-M_at 374.688 P 15.1719
AFFX-BioB-3_at 269.277 A 9.08579
AFFX-BioC-5_at 913.03 P 55.7608
AFFX-BioC-3_at 845.013 P 23.9077
AFFX-BioDn-5_at 869.78 P 33.0675
AFFX-BioDn-3_at 4699.32 P 335.799
AFFX-CreX-5_at 9778.57 P 502.75
AFFX-CreX-3_at 13081.5 P 648.476
AFFX-DapX-5_at 64.3548 A 1.75105
AFFX-DapX-M_at 52.7429 A 4.38631
AFFX-DapX-3_at 71.9337 A 2.61953
AFFX-LysX-5_at 40.9245 A 1.87131
AFFX-LysX-M_at 77.0336 A 3.42994
AFFX-LysX-3_at 94.4158 A 2.398
AFFX-PheX-5_at 36.8198 A 2.1655

Total number of rows: 14010

Table truncated, full table size 381 Kbytes.




Supplementary data files not provided

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