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Sample GSM30981 Query DataSets for GSM30981
Status Public on Sep 30, 2004
Title COP#90 U34C
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) [email protected]
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL87
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 8 A 0.921998
AFFX-MurIL10_at 6.9 A 0.617401
AFFX-MurIL4_at 1.4 A 0.976071
AFFX-MurFAS_at 2.2 A 0.712257
AFFX-BioB-5_at 160.1 P 0.018281
AFFX-BioB-M_at 313.3 P 0.000972
AFFX-BioB-3_at 154.3 P 0.013811
AFFX-BioC-5_at 593.4 P 0.000169
AFFX-BioC-3_at 395.2 P 0.000044
AFFX-BioDn-5_at 524.5 P 0.001248
AFFX-BioDn-3_at 3220.4 P 0.000169
AFFX-CreX-5_at 6821.4 P 0.000044
AFFX-CreX-3_at 8696.6 P 0.000044
AFFX-BioB-5_st 25.7 A 0.440646
AFFX-BioB-M_st 11.1 A 0.794268
AFFX-BioB-3_st 10.8 A 0.9273
AFFX-BioC-5_st 6.9 A 0.916408
AFFX-BioC-3_st 2.3 A 0.945787
AFFX-BioDn-5_st 19.8 A 0.340661
AFFX-BioDn-3_st 96.9 A 0.102165

Total number of rows: 8789

Table truncated, full table size 265 Kbytes.




Supplementary data files not provided

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