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Sample GSM31003 Query DataSets for GSM31003
Status Public on Sep 30, 2004
Title DA#160 U34C
Sample type RNA
 
Source name Heart, Left Ventricle
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description RNA was extracted from the left ventricle of the heart, taken from a single 15 week old inbred rat that was maintained under specific pathogen free conditions. Target cRNA was prepared using the Enzo Bioarray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics, Farmingdale, NY), purified on a column (Rneasy mini kit, Qiagen), and hybridized to commercially available Affymetrix rat GeneChips arrays according to protocols recommended by the manufacturers. Data was analyzed using the GeneChip Expression Analysis Software (Affymetrix).
Keywords = quantitative real-time RT-PCR
Keywords = insulin receptor substrate 2 (Irs2)
Keywords = phosphatidylinositol 3-kinase
Keywords = regulatory subunit 1
Keywords = (Pik3r1)
Keywords = endurance running
Keywords = treadmill running
 
Submission date Sep 24, 2004
Last update date May 27, 2005
Contact name Justin A. Ways
E-mail(s) [email protected]
Phone 419-383-4150
Organization name Medical College of Ohio
Department Physiology and Cardiovascular Genomics
Street address 3035 Arlington Ave.
City Toledo
State/province OH
ZIP/Postal code 43614
Country USA
 
Platform ID GPL87
Series (1)
GSE1795 Expression Profiling of DA, COP, and F1(COPxDA) rat left ventricles

Data table header descriptions
ID_REF
VALUE normalized signal representing quantity of transcript
ABS_CALL absolute detection call where P=present, A=absent, and M=marginal
DETECTION P-VALUE measure of the significance of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 5.8 A 0.932322
AFFX-MurIL10_at 3.8 A 0.794268
AFFX-MurIL4_at 1.1 A 0.998752
AFFX-MurFAS_at 5.3 A 0.760937
AFFX-BioB-5_at 206.8 A 0.062929
AFFX-BioB-M_at 281.2 P 0.009337
AFFX-BioB-3_at 149.7 M 0.054213
AFFX-BioC-5_at 672.1 P 0.000225
AFFX-BioC-3_at 334 P 0.000754
AFFX-BioDn-5_at 689.8 P 0.000972
AFFX-BioDn-3_at 3748.4 P 0.000127
AFFX-CreX-5_at 5299 P 0.000044
AFFX-CreX-3_at 7321.6 P 0.000044
AFFX-BioB-5_st 43.7 A 0.300606
AFFX-BioB-M_st 22.1 A 0.891021
AFFX-BioB-3_st 16.6 A 0.932322
AFFX-BioC-5_st 7.4 A 0.904333
AFFX-BioC-3_st 6.1 A 0.9273
AFFX-BioDn-5_st 20.5 A 0.52976
AFFX-BioDn-3_st 72.1 A 0.195266

Total number of rows: 8789

Table truncated, full table size 265 Kbytes.




Supplementary data files not provided

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