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Sample GSM318337 Query DataSets for GSM318337
Status Public on Sep 05, 2009
Title S_H_rep1
Sample type RNA
 
Source name embryonic heart
Organism Gallus gallus
Characteristics the embryonic heart of Shouguang Chicken in hypoxia
Extracted molecule total RNA
Extraction protocol The extraction of total RNA with TRIzol reagent was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 8 microg total RNA (Expression Analysis Technical Manual,P/N900223 or 90365, Affymetrix).
 
Hybridization protocol Fragmented cRNA was hybridized to Affymetrix GeneChip® Chicken Genome Array for 16 h at 45°C. The hybridized probe array was automatically washed and then stained with streptavidin-phycoerythrin (SAPE) in a GeneChip® Fluidics Station 450.
Scan protocol The arrays were scanned on a Affymetrix GeneChip® Scanner 3000.
Description Gene expression data from the embryonic heart of Shouguang Chicken in hypoxia.
Data processing The data were analyzed by GeneChip® Operating Software (GCOS) with Affymetrix default analysis settings.
 
Submission date Sep 05, 2008
Last update date Sep 05, 2008
Contact name mei li
E-mail(s) [email protected]
Organization name China Agricultural University
Street address Haidian district
City Beijing
ZIP/Postal code 86100193
Country China
 
Platform ID GPL3213
Series (1)
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 451.79 P 0.000753643
AFFX-BioB-M_at 507.401 P 0.000224668
AFFX-BioB-3_at 456.101 P 0.00010954
AFFX-BioC-5_at 1593.6 P 5.16732e-05
AFFX-BioC-3_at 1584.92 P 4.42873e-05
AFFX-BioDn-5_at 3475.28 P 4.42873e-05
AFFX-BioDn-3_at 7522.04 P 0.000126798
AFFX-CreX-5_at 16390.5 P 5.16732e-05
AFFX-CreX-3_at 23428.9 P 4.42873e-05
AFFX-DapX-5_at 797.621 P 7.00668e-05
AFFX-DapX-M_at 1746.91 P 0.000581214
AFFX-DapX-3_at 1812.47 P 6.02111e-05
AFFX-LysX-5_at 93.7238 P 0.00762003
AFFX-LysX-M_at 244.226 A 0.108979
AFFX-LysX-3_at 478.843 P 5.16732e-05
AFFX-PheX-5_at 192.749 P 0.000195116
AFFX-PheX-M_at 244.889 P 0.0103167
AFFX-PheX-3_at 324.804 P 0.00933744
AFFX-ThrX-5_at 255.09 P 0.002867
AFFX-ThrX-M_at 263.954 P 0.000296708

Total number of rows: 38535

Table truncated, full table size 1488 Kbytes.




Supplementary file Size Download File type/resource
GSM318337.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM318337.CHP.gz 207.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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