|
| Status |
Public on Jan 08, 2019 |
| Title |
FFPE X121861503 [X19_996] |
| Sample type |
RNA |
| |
|
| Source name |
breast tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tumor tumoradj: tumor
cohort: NHS1
microarray batch: 10
age at dx: 72
dx year: 2000
tumor size: 2
grade: 2
Stage: 1
surgery: mast
treatment: hormtx
recurrence: 0
recurrence months: 114
distant recurrence: 0
distant recurrence months: 114
er ihc: 1
pr ihc: 1
her2 ihc: 1
ki67 ihc: 0
molecularsubtype byihc: LumB
molecularsubtype pam50 modifiedmedianmethod: LumA
proliferationscore modifiedmedianmethod: -0.573724676848251
rorptscore modifiedmedianmethod: 10.2186930439301
rorptgroup modifiedmedianmethod: low
molecularsubtype pam50 subgroupspecificmethod: LumA
proliferationscore subgroupspecificmethod: -0.499548930693223
rorptscore subgroupspecificmethod: 15.3798049725125
rorptgroup subgroupspecificmethod: low
sample id: X121861503
nhs_cohort: NHS1
bmi_2yrs_bef_dx: 29.52342961
avg_bodysize_age1020: NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Formalin-fixed paraffin-embedded tissue blocks
Qiagen AllPrep RNA isolation kit was used to isolate total RNA
|
| Label |
biotin
|
| Label protocol |
Labeling was performed according to standard Affymetrix protocols
|
| |
|
| Hybridization protocol |
Hybridization was performed according to standard protocols
|
| Scan protocol |
Scanning was performed according to standard protocols
|
| Description |
X19_996
|
| Data processing |
Gene expression data were normalized and summarized using Robust Multiarray Average (RMA)
|
| |
|
| Submission date |
Jun 11, 2018 |
| Last update date |
Aug 20, 2020 |
| Contact name |
Rulla M Tamimi |
| E-mail(s) |
[email protected]
|
| Phone |
617-525-0862
|
| Organization name |
Brigham and Women's Hospital
|
| Department |
Medicine
|
| Lab |
Channing Division of Network Medicine
|
| Street address |
181 Longwood Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL22920 |
| Series (1) |
| GSE115577 |
Tumor & Tumor-Adj Gene Expression in the Nurses' Health Study Cohorts |
|
| Relations |
| Reanalysis of |
GSM2457705 |
