|
| Status |
Public on Jan 08, 2019 |
| Title |
FFPE X113134938 [X40_X.384_NHSIIplate5] |
| Sample type |
RNA |
| |
|
| Source name |
breast tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tumor tumoradj: tumor-adjacent normal
cohort: NHS1
microarray batch: 17
age at dx: 52
dx year: 1993
tumor size: 2
grade: NA
Stage: 1
surgery: mast
treatment: mixed
recurrence: 0
recurrence months: 290
distant recurrence: 0
distant recurrence months: 290
er ihc: 0
pr ihc: 0
her2 ihc: NA
ki67 ihc: NA
molecularsubtype byihc: Missing
molecularsubtype pam50 modifiedmedianmethod: Basal
proliferationscore modifiedmedianmethod: -0.0472123349312682
rorptscore modifiedmedianmethod: 37.5701825927455
rorptgroup modifiedmedianmethod: med
molecularsubtype pam50 subgroupspecificmethod: Basal
proliferationscore subgroupspecificmethod: 0.0279226392568851
rorptscore subgroupspecificmethod: 41.3576259395422
rorptgroup subgroupspecificmethod: med
sample id: X113134938
nhs_cohort: NHS1
bmi_2yrs_bef_dx: 23.17245929
avg_bodysize_age1020: 2
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Formalin-fixed paraffin-embedded tissue blocks
Qiagen AllPrep RNA isolation kit was used to isolate total RNA
|
| Label |
biotin
|
| Label protocol |
Labeling was performed according to standard Affymetrix protocols
|
| |
|
| Hybridization protocol |
Hybridization was performed according to standard protocols
|
| Scan protocol |
Scanning was performed according to standard protocols
|
| Description |
X40_X.384_NHSIIplate5
|
| Data processing |
Gene expression data were normalized and summarized using Robust Multiarray Average (RMA)
|
| |
|
| Submission date |
Jun 11, 2018 |
| Last update date |
Aug 20, 2020 |
| Contact name |
Rulla M Tamimi |
| E-mail(s) |
[email protected]
|
| Phone |
617-525-0862
|
| Organization name |
Brigham and Women's Hospital
|
| Department |
Medicine
|
| Lab |
Channing Division of Network Medicine
|
| Street address |
181 Longwood Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL22920 |
| Series (1) |
| GSE115577 |
Tumor & Tumor-Adj Gene Expression in the Nurses' Health Study Cohorts |
|
| Relations |
| Reanalysis of |
GSM2457412 |
