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Sample GSM3232 Query DataSets for GSM3232
Status Public on Apr 15, 2004
Title jzo012-rp1-v5-u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were Rp1 knockout mice (Rp1-/-). At P14, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) [email protected]
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE125 P14 knockout
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 83.6 A 0.794288
AFFX-MurIL10_at 20 20 119.6 A 0.205732
AFFX-MurIL4_at 20 20 9.9 A 0.834139
AFFX-MurFAS_at 20 20 144.8 A 0.175328
AFFX-BioB-5_at 20 20 1367 P 0.00034
AFFX-BioB-M_at 20 20 3402 P 0.000044
AFFX-BioB-3_at 20 20 1785.6 P 0.000169
AFFX-BioC-5_at 20 20 3993.7 P 0.000044
AFFX-BioC-3_at 20 20 3221.7 P 0.000095
AFFX-BioDn-5_at 20 20 5696 P 0.000044
AFFX-BioDn-3_at 20 20 19290.4 P 0.000044
AFFX-CreX-5_at 20 20 41879.7 P 0.000044
AFFX-CreX-3_at 20 20 62882.2 P 0.000044
AFFX-BioB-5_st 20 20 177.1 A 0.287743
AFFX-BioB-M_st 20 20 137.7 A 0.275146
AFFX-BioB-3_st 20 20 66.3 A 0.617401
AFFX-BioC-5_st 20 20 25.7 A 0.973889
AFFX-BioC-3_st 20 20 8.7 A 0.949771
AFFX-BioDn-5_st 20 20 372.7 M 0.054213
AFFX-BioDn-3_st 20 20 279.7 A 0.131361

Total number of rows: 12488

Table truncated, full table size 396 Kbytes.




Supplementary file Size Download File type/resource
GSM3232_jzo012-rp1-v5-u74av2.CEL.gz 2.6 Mb (ftp)(http) CEL

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