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GEO accession:
Sample GSM326035
Query DataSets for GSM326035
Status
Public on Mar 01, 2009
Title
Control replicate 5
Sample type
RNA
Source name
Trophozoites transfected with a control plasmid
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS
Media: TYI + G418
Long term axenic growth
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
Affymetrix single amplification
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites after long term axenic growth. Isolated mid-log phase.
Data processing
GCOS scaling only- target 500
Submission date
Oct 02, 2008
Last update date
Dec 22, 2008
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (1)
GSE13023
Effects of overexpression of EhMyb-dr on transcription in Entamoeba histolytica
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1.m00596_at
16773.6
P
1.m00597_at
3199.1
P
1.m00599_at
9
A
1.m00600_x_at
39.7
A
1.m00602_at
86.3
A
1.m00602_x_at
121.1
A
1.m00603_at
305.9
P
1.m00603_x_at
234.7
P
1.m00606_s_at
1225.1
P
1.m00607_at
179.2
P
1.m00607_x_at
212.3
P
1.m00608_at
362.8
P
1.m00608_x_at
298
P
1.m00609_at
6.6
A
1.m00609_x_at
30.8
A
1.m00610_at
73.3
A
1.m00611_at
295.8
P
1.m00611_x_at
154.8
P
1.m00613_at
2995.4
P
1.m00613_x_at
2655.2
P
Total number of rows:
11478
Table truncated, full table size
248 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM326035.CEL.gz
1.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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