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Sample GSM336072 Query DataSets for GSM336072
Status Public on Apr 23, 2010
Title UIP, biological rep9
Sample type RNA
 
Source name Lung tissue with usual interstitial pneumonia (UIP), biological rep9
Organism Homo sapiens
Characteristics Tissue from a patient with pathological diagnosis of usual interstitial pneumonia.
Extracted molecule total RNA
Extraction protocol Total RNA extracted using miRNeasy mini kit according to the manufacturer's instructions.
Label Cy3
Label protocol Cy3 labeled RNA was prepared according to the standard Agilent protocol from 100ng total RNA
 
Hybridization protocol Labeled RNA was hybridized for 20 hr at 55C on Agilent 8X15K microRNA array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Scanned on an Agilent G2505A Scanner
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. miRNA expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction v9.5.3, default miRNA parameters
 
Submission date Oct 23, 2008
Last update date Apr 23, 2010
Contact name Kusum Vijay Pandit
E-mail(s) [email protected]
Phone 412-624-9046
Organization name University of Pittsburgh
Department Medicine-PACCM
Street address 200, Lothrop street, W1200-25A Biomedical Science Tower
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL6955
Series (1)
GSE13316 miRNA expression data in idiopathic pulmonary fibrosis

Data table header descriptions
ID_REF FeatureNum
VALUE gProcessedSignal

Data table
ID_REF VALUE
1 540.3801
2 1.872546
3 4.851557
4 220.9097
5 9.802471
6 -1.827419
7 2.310367
8 -1.290777
10 0.4902536
11 8.01333
12 0.3384864
14 -2.320406
17 -0.3795001
19 1.125129
20 1.137123
22 2.83651
23 2.504476
26 3.380931
27 -1.730781
28 750.6593

Total number of rows: 12033

Table truncated, full table size 173 Kbytes.




Supplementary file Size Download File type/resource
GSM336072.txt.gz 1.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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