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Sample GSM336079 Query DataSets for GSM336079
Status Public on Apr 23, 2010
Title control, biological rep6
Sample type RNA
 
Source name normal Lung tissue, control, biological rep6
Organism Homo sapiens
Characteristics Normal lung tissues obtained from the disease free margins with normal histology of lung cancer resection
Extracted molecule total RNA
Extraction protocol Total RNA extracted using miRNeasy mini kit according to the manufacturer's instructions.
Label Cy3
Label protocol Cy3 labeled RNA was prepared according to the standard Agilent protocol from 100ng total RNA
 
Hybridization protocol Labeled RNA was hybridized for 20 hr at 55C on Agilent 8X15K microRNA array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Scanned on an Agilent G2505A Scanner
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. miRNA expression data from a lung with usual interstitial pneumonia.
Data processing Agilent Feature Extraction v9.5.3, default miRNA parameters
 
Submission date Oct 23, 2008
Last update date Apr 23, 2010
Contact name Kusum Vijay Pandit
E-mail(s) [email protected]
Phone 412-624-9046
Organization name University of Pittsburgh
Department Medicine-PACCM
Street address 200, Lothrop street, W1200-25A Biomedical Science Tower
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL6955
Series (1)
GSE13316 miRNA expression data in idiopathic pulmonary fibrosis

Data table header descriptions
ID_REF FeatureNum
VALUE gProcessedSignal

Data table
ID_REF VALUE
1 240.1916
2 0.788765
3 4.513863
4 262.308
5 3.234553
6 2.620614
7 3.204929
8 0.509047
10 2.387011
11 14.11124
12 -2.312487
14 0.02998373
17 2.914361
19 0.529088
20 -1.124358
22 3.200163
23 7.053361
26 -0.0880218
27 2.838584
28 287.911

Total number of rows: 12033

Table truncated, full table size 173 Kbytes.




Supplementary file Size Download File type/resource
GSM336079.txt.gz 1.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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