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Sample GSM34286 Query DataSets for GSM34286
Status Public on Nov 08, 2004
Title MG_SGa
Sample type SAGE
Anchor NlaIII
Tag Count 237054
Tag Length 17
 
Source name 3 days old mycelia from Magnaporthe grisea (strain 70-15)
Organism Pyricularia oryzae 70-15
Extracted molecule total RNA
 
Description Library: MG_SGa,
Treatment: Fungus grown on a minimum medium [0.2% (w/v) yeast extract, and 1% (w/v) Sucrose at 28°C at 200 rpm],
Reaction: Liquid grown mycelium,
Time point: 3 days,
Tissue: 3 days old mycelia
Tag extraction: Ditags are rejected if they do not start and end with CATG and the length is not between 40-43 bases. Tags are only rejected if they contain one or more N's. View quality of tags at http://www.mgosdb.org/sage.
Keywords = Magnaporthe Grisea
Keywords = LongSAGE
Keywords = Rice blast disease
Keywords = MG_SGa
Keywords = MGOS
Lot batch =
 
Submission date Nov 01, 2004
Last update date Nov 19, 2008
Contact name Carol Soderlund
E-mail(s) [email protected]
Phone 5206269600
URL http://www.agcol.arizona.edu
Organization name University of Arizona
Department BIO5 Institute
Lab Arizona Genome Computational Laboratory
Street address 303, Forbes Building
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 
Platform ID GPL1676
Series (1)
GSE1924 Oryza Sativa and Magnaporthe Grisea LongSAGE

Data table header descriptions
TAG
COUNT Count
TPM tags per million

Data table
TAG COUNT TPM
CCTGTTCGAGCGTCATT 5137 21670.17
GCCCCTGCACTAAGGAT 4800 20248.55
GCTACAAACGACCGACA 3916 16519.44
TGCCGGAAAGTTGTACG 3790 15987.92
TTACTCTAGCCTAATAT 3624 15287.66
GCTTTTACATTGTGGGC 3056 12891.58
GAAACAGGGATCATAGG 2254 9508.38
AATAGGGTTTTTTAATT 1766 7449.78
CTAAAAACCCCGACTTC 1689 7124.96
CCCTTCACTGGGCGTGT 1632 6884.51
ACTTAAACGAAATTTCT 1516 6395.17
AAGTTGAGCTATTCTAC 1369 5775.06
GAATAATAGAATAGGAC 1253 5285.72
ATAACTTCTCGAATCGC 1248 5264.62
GGTACATTTAGAAAGCT 1206 5087.45
GGATGGCCGGTTGTTAT 1200 5062.14
ACGGCGGTCGAACACCT 1095 4619.20
TATATTCTCAGCTATGA 1075 4534.83
AATGGATTAACGAGATT 855 3606.77
GCCGTTCTTAGTTGGTG 834 3518.19

Total number of rows: 51925

Table truncated, full table size 1281 Kbytes.




Supplementary data files not provided

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