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Sample GSM349747 Query DataSets for GSM349747
Status Public on Feb 20, 2009
Title SLE1-TC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit from SLE patient
Treatment protocol Unstimulated
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, SLE1-TC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2073.7 P 0.000445901
AFFX-BioB-M_at 3284.82 P 4.42873e-05
AFFX-BioB-3_at 1975.72 P 4.42873e-05
AFFX-BioC-5_at 6099.7 P 5.16732e-05
AFFX-BioC-3_at 8007.58 P 4.42873e-05
AFFX-BioDn-5_at 12103.8 P 4.42873e-05
AFFX-BioDn-3_at 30023.9 P 4.42873e-05
AFFX-CreX-5_at 55918.1 P 5.16732e-05
AFFX-CreX-3_at 76073.2 P 4.42873e-05
AFFX-DapX-5_at 61.7173 A 0.51489
AFFX-DapX-M_at 20.2828 A 0.932339
AFFX-DapX-3_at 17.3424 A 0.922016
AFFX-LysX-5_at 20.1068 A 0.440646
AFFX-LysX-M_at 45.6619 A 0.783476
AFFX-LysX-3_at 22.5102 A 0.470241
AFFX-PheX-5_at 20.8443 A 0.772364
AFFX-PheX-M_at 10.6474 A 0.986189
AFFX-PheX-3_at 71.4776 A 0.39692
AFFX-ThrX-5_at 31.1284 A 0.659339
AFFX-ThrX-M_at 17.6744 A 0.860518

Total number of rows: 54675

Table truncated, full table size 1614 Kbytes.




Supplementary file Size Download File type/resource
GSM349747.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM349747.CHP.gz 297.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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