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Sample GSM35920 Query DataSets for GSM35920
Status Public on Nov 24, 2004
Title CNS_SNB19
Sample type RNA
 
Channel 1
Source name Cy5-CNS_SNB19
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1080 1366 688 512 0 1821.5 1611.4 -0.176812333960426 0.884655504 -0.176812333960426
2 1136 1488 728 1377 0 2020.2 2734.2 0.436620648936856 1.353430353 0.436620648936856
3 1072 8091 680 5793 0 7788.6 7615.3 -0.0324631559507593 0.977749531 -0.0324631559507593
4 1144 649 744 565 0 1311.8 1789.2 0.447766883328447 1.363927428 0.447766883328447
5 968 89 648 34 0 780.4 923.7 0.243210590552411 1.183623783 0.243210590552411
6 1080 3597 656 3642 0 3861.6 5205.5 0.430838012101158 1.348016366 0.430838012101158
7 984 771 648 851 0 1295.9 2030 0.647525332566325 1.566478895 0.647525332566325
8 1072 2730 656 1291 0 2990.7 2475.2 -0.27293809747612 0.827632327 -0.27293809747612
9 984 16034 640 14652 0 15529.1 16758.2 0.109892977776167 1.07914818 0.109892977776167
10 1064 416 656 234 0 1042.3 1263.7 0.277883430259878 1.212414852 0.277883430259878
11 976 244 648 167 0 872.4 1139.7 0.385592443236074 1.306396149 0.385592443236074
12 1072 122 664 68 0 866.2 1009 0.220154096354221 1.164858 0.220154096354221
13 1344 3063 656 2544 0 3581.1 3938.1 0.137096939919849 1.099690039 0.137096939919849
14 1392 227 656 99 0 1141.6 1070.8 -0.092368195770315 0.93798178 -0.092368195770315
15 1344 4477 648 2817 0 4807 4195.9 -0.196156508096316 0.872872894 -0.196156508096316
16 1416 2128 656 1478 0 2792.2 2708.5 -0.0439081923636782 0.970023637 -0.0439081923636782
17 1240 6988 624 2802 0 6911.3 4078.7 -0.760847708030233 0.590149465 -0.760847708030233
18 1376 163 648 101 0 1087.6 1059.9 -0.0372199008238407 0.974531078 -0.0372199008238407
19 1256 188 632 40 0 1035.1 937.5 -0.142879556647523 0.905709593 -0.142879556647523
20 1392 11695 656 207 0 10534.8 1072.1 -3.2966515467727 0.101767475 -3.2966515467727

Total number of rows: 9706

Table truncated, full table size 826 Kbytes.




Supplementary data files not provided
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