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Sample GSM384322 Query DataSets for GSM384322
Status Public on Mar 20, 2009
Title mSAGE_Mammary_gland_normal_p53_wildtype_pseudopregnant_organoid_B_16
Sample type SAGE
Anchor NlaIII
Tag Count 64197
Tag Length 10
 
Source name mammary gland, normal, bulk, epithelium, pseudopregnant, female, short sage, adult, balb/c, p53 wild type
Organism Mus musculus
Characteristics organ/tissue: mammary gland
tissue preparation: bulk
age: 15 wk
sex: female
cell type: Normal mouse mammary epithelium, pseudopregnant
mutations: p53 wild type
other information: Balb/c mammary epithelium from transplants grown into cleared fat pads of syngeneic hosts. Genotype = P53 wild type mammary gland transplants, that received hormonal treatment by means of pituitary isografts, harvested 7 wk post-transplatation and 5 wk of hormonal treatment. Ref. Oncogene (2002) 21, 6366-6376
Biomaterial provider Daniel Medina, Baylor College of Medicine
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: BsmF I
CGAP_Numeric_library_ID: 746
Library_producer: C. Marcelo Aldaz
Laboratory: C. M. Aldaz et al., Oncogene 21, 6366-76 (2002)
References: C. M. Aldaz et al., Oncogene 21, 6366-76 (2002) [PUBMED=12214277]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) [email protected]
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 141 2196.36
AAAAAAAAAC 2 31.15
AAAAAAAAAG 1 15.58
AAAAAAAAAT 11 171.35
AAAAAAAACG 1 15.58
AAAAAAAATA 1 15.58
AAAAAAACAA 1 15.58
AAAAAAAGAA 1 15.58
AAAAAAATAA 1 15.58
AAAAAAATAG 1 15.58
AAAAAAGGTA 1 15.58
AAAAAATAAA 2 31.15
AAAAAATGAG 1 15.58
AAAAAATTAA 1 15.58
AAAAACAAAA 3 46.73
AAAAACAAGT 1 15.58
AAAAACAATC 1 15.58
AAAAACAGGA 1 15.58
AAAAACAGTG 1 15.58
AAAAACCAAA 1 15.58

Total number of rows: 19912

Table truncated, full table size 371 Kbytes.




Supplementary data files not provided

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