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Sample GSM384433 Query DataSets for GSM384433
Status Public on Mar 20, 2009
Title mSAGE_Vascular_endothelium_SW620_tumor_associated_AP_SW620TEC
Sample type SAGE
Anchor NlaIII
Tag Count 112035
Tag Length 10
 
Source name vascular, tumor associated, endothelium, antibody purified, extracted short sage, adult
Organism Mus musculus
Characteristics organ/tissue: vascular
tissue preparation: antibody purified
sex: unknown
Extracted molecule total RNA
Extraction protocol N/A
 
Description Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 2230
Library_producer: Brad St. Croix
Laboratory: Brad St. Croix, National Cancer Institute, Tumor Angiogenesis Section
References: Seaman S et al. Cancer Cell. 2007 Jun;11(6):539-54 [PUBMED=17560335]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) [email protected]
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL11
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15311 Cancer Genome Anatomy Project (CGAP) Mouse SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 42 374.88
AAAAAAAAAT 30 267.77
AAAAAAAATC 1 8.93
AAAAAAAATG 2 17.85
AAAAAAAATT 1 8.93
AAAAAAACCC 1 8.93
AAAAAAACTA 1 8.93
AAAAAAATAA 2 17.85
AAAAAACACA 1 8.93
AAAAAACCAA 1 8.93
AAAAAACCCA 1 8.93
AAAAAAGAAC 1 8.93
AAAAAAGCAA 1 8.93
AAAAAATAAA 7 62.48
AAAAAATAAT 1 8.93
AAAAAATAGA 1 8.93
AAAAAATCCT 1 8.93
AAAAAATGAG 1 8.93
AAAAAATTGA 7 62.48
AAAAAATTGC 1 8.93

Total number of rows: 36012

Table truncated, full table size 646 Kbytes.




Supplementary data files not provided

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