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Sample GSM385948 Query DataSets for GSM385948
Status Public on Mar 27, 2009
Title E6.5 retina RCAS control rep2
Sample type RNA
 
Source name E6.5 retina control (2)
Organism Gallus gallus
Characteristics protocol: control
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS c-hairy1. Retinas were recovered at E6.5.
RCAS provirus vector with no insert was used as a control.
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) [email protected]
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 122.784 P 0.000972149
AFFX-BioB-M_at 194.16 P 0.000296708
AFFX-BioB-3_at 162.227 P 4.42873e-05
AFFX-BioC-5_at 435.8 P 5.16732e-05
AFFX-BioC-3_at 517.947 P 4.42873e-05
AFFX-BioDn-5_at 971.643 P 4.42873e-05
AFFX-BioDn-3_at 1803.73 P 0.000126798
AFFX-CreX-5_at 5156.37 P 5.16732e-05
AFFX-CreX-3_at 7345.89 P 4.42873e-05
AFFX-DapX-5_at 20.0515 P 0.00179591
AFFX-DapX-M_at 68.6378 P 0.000753643
AFFX-DapX-3_at 105.187 P 0.000340305
AFFX-LysX-5_at 6.4189 A 0.382599
AFFX-LysX-M_at 16.1419 A 0.39692
AFFX-LysX-3_at 28.7087 P 0.000296708
AFFX-PheX-5_at 14.6122 A 0.0894591
AFFX-PheX-M_at 1.67761 A 0.891021
AFFX-PheX-3_at 22.4319 A 0.083592
AFFX-ThrX-5_at 3.55192 A 0.659339
AFFX-ThrX-M_at 2.23624 A 0.659339

Total number of rows: 38535

Table truncated, full table size 1494 Kbytes.




Supplementary file Size Download File type/resource
GSM385948.CEL.gz 5.8 Mb (ftp)(http) CEL
GSM385948.CHP.gz 9.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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