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Sample GSM385949 Query DataSets for GSM385949
Status Public on Mar 27, 2009
Title E6.5 retina RCAS Delta rep1
Sample type RNA
 
Source name E6.5 retina Delta (1)
Organism Gallus gallus
Characteristics protocol: expression of Delta
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS Delta-1. Retinas were recovered at E6.5.
Delta-1 inhibits neuronal differentiation
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) [email protected]
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 137.454 P 0.000856509
AFFX-BioB-M_at 183.349 P 0.000662269
AFFX-BioB-3_at 156.322 P 5.16732e-05
AFFX-BioC-5_at 407.516 P 5.16732e-05
AFFX-BioC-3_at 486.892 P 5.16732e-05
AFFX-BioDn-5_at 945.401 P 4.42873e-05
AFFX-BioDn-3_at 1658.06 P 0.000126798
AFFX-CreX-5_at 4933.89 P 5.16732e-05
AFFX-CreX-3_at 6929.06 P 4.42873e-05
AFFX-DapX-5_at 39.07 P 0.00179591
AFFX-DapX-M_at 94.9106 P 0.000753643
AFFX-DapX-3_at 133.521 P 0.000581214
AFFX-LysX-5_at 14.246 A 0.123572
AFFX-LysX-M_at 6.13905 A 0.645547
AFFX-LysX-3_at 25.826 P 0.000856509
AFFX-PheX-5_at 24.2487 A 0.0894591
AFFX-PheX-M_at 13.1059 A 0.147939
AFFX-PheX-3_at 27.3594 P 0.0182806
AFFX-ThrX-5_at 1.65251 A 0.916408
AFFX-ThrX-M_at 24.8928 P 0.0429619

Total number of rows: 38535

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM385949.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM385949.CHP.gz 9.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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