NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM385950 Query DataSets for GSM385950
Status Public on Mar 27, 2009
Title E6.5 retina RCAS Delta rep2
Sample type RNA
 
Source name E6.5 retina expressing Delta (2)
Organism Gallus gallus
Characteristics protocol: expression of Delta
age: E6.5
tissue: retina
Extracted molecule polyA RNA
Extraction protocol Tissues were homogenized with Trizol reagents.
Total RNA was purified following the manufacturer's instruction.
polyA RNA was purified on Oligo-dT column.
Label 3' amplification Reagents for IVT
Label protocol Labeling reaction was carried out following the manufacturer's instruction.
 
Hybridization protocol Hybridization was carried out following the manufacturer's instruction.
Scan protocol Scan was carried out following the manufacturer's instruction.
Description E1.5 retinas were electroporated with RCAS Delta-1. Retinas were recovered at E6.5.
Delta-1 inhibits neuronal differentiation
Data processing Affymetrix GCOS 1.4
 
Submission date Mar 25, 2009
Last update date Sep 23, 2010
Contact name Shinichi Nakagawa
E-mail(s) [email protected]
Phone +81-48-467-4227
Fax +81-48-467-4517
Organization name RIKEN ASI
Lab Nakagawa Initiative Research Unit
Street address Hirosawa 2-1
City Wako
State/province Saitama
ZIP/Postal code 351-0198
Country Japan
 
Platform ID GPL3213
Series (1)
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b

Data table header descriptions
ID_REF
VALUE MAS 5 signal from GCOS 1.4
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 117.442 P 0.000972149
AFFX-BioB-M_at 200.071 P 0.000662269
AFFX-BioB-3_at 160.194 P 4.42873e-05
AFFX-BioC-5_at 413.112 P 8.14279e-05
AFFX-BioC-3_at 535.792 P 5.16732e-05
AFFX-BioDn-5_at 981.662 P 4.42873e-05
AFFX-BioDn-3_at 1761.59 P 0.000146581
AFFX-CreX-5_at 5169.06 P 5.16732e-05
AFFX-CreX-3_at 7386.59 P 4.42873e-05
AFFX-DapX-5_at 26.3022 P 0.00618711
AFFX-DapX-M_at 85.2453 P 0.0012475
AFFX-DapX-3_at 110.016 P 0.00159257
AFFX-LysX-5_at 16.4659 P 0.00933744
AFFX-LysX-M_at 6.00381 A 0.724854
AFFX-LysX-3_at 15.7217 A 0.123572
AFFX-PheX-5_at 18.6001 A 0.195266
AFFX-PheX-M_at 11.5605 A 0.672921
AFFX-PheX-3_at 29.2791 A 0.102165
AFFX-ThrX-5_at 19.9552 A 0.102165
AFFX-ThrX-M_at 20.9285 A 0.108979

Total number of rows: 38535

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM385950.CEL.gz 5.8 Mb (ftp)(http) CEL
GSM385950.CHP.gz 9.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap