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Sample GSM396143 Query DataSets for GSM396143
Status Public on Apr 14, 2010
Title .SAL_VIII_3
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 8h
drug: Saline
group no.: 18
large batch: X
plate: 1953348007
hybridization batch: III
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.436763329
ILMN_3160339 7.194182415
ILMN_3161159 7.816639002
ILMN_2758597 7.319212162
ILMN_2644469 12.86975173
ILMN_2656393 8.017921229
ILMN_3160634 7.596936237
ILMN_3161394 11.26533943
ILMN_2610322 6.659125916
ILMN_2741606 7.012635576
ILMN_1247267 10.12118071
ILMN_2594811 7.196234357
ILMN_2689425 6.268226011
ILMN_2745565 6.741945334
ILMN_1212992 6.580860233
ILMN_2629183 6.599487853
ILMN_1251092 9.420124605
ILMN_2715803 10.18614532
ILMN_2762509 12.01533237
ILMN_2496817 10.56323328

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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