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Sample GSM396162 Query DataSets for GSM396162
Status Public on Apr 14, 2010
Title .SAL_IV_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 4h
drug: Saline
group no.: 17
large batch: X
plate: 4051964034
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 6.932515762
ILMN_3160339 6.755378596
ILMN_3161159 7.833505587
ILMN_2758597 6.781205962
ILMN_2644469 12.97105899
ILMN_2656393 7.748792962
ILMN_3160634 7.207534368
ILMN_3161394 10.58862084
ILMN_2610322 6.781832382
ILMN_2741606 7.350151765
ILMN_1247267 9.825670927
ILMN_2594811 7.0042137
ILMN_2689425 6.452820147
ILMN_2745565 6.427812005
ILMN_1212992 6.375084119
ILMN_2629183 6.761062464
ILMN_1251092 9.282807185
ILMN_2715803 10.26844126
ILMN_2762509 11.96303926
ILMN_2496817 10.33112957

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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