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Sample GSM396172 Query DataSets for GSM396172
Status Public on Apr 14, 2010
Title MF_I_2
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics timepoint: 1h
drug: Morphine
group no.: 3
large batch: X
plate: 4051964045
hybridization batch: II
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 22, 2009
Last update date May 02, 2009
Contact name Marcin Piechota
E-mail(s) [email protected]
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6105
Series (1)
GSE15774 Transcriptional networks regulated by drugs of abuse in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_2431248 7.365650843
ILMN_3160339 7.028704
ILMN_3161159 7.923331683
ILMN_2758597 7.070856008
ILMN_2644469 12.48004342
ILMN_2656393 7.95102958
ILMN_3160634 7.667047354
ILMN_3161394 11.00722633
ILMN_2610322 6.524614125
ILMN_2741606 7.24619717
ILMN_1247267 10.11932477
ILMN_2594811 6.928538947
ILMN_2689425 6.066220011
ILMN_2745565 6.490595822
ILMN_1212992 6.680756757
ILMN_2629183 6.74659745
ILMN_1251092 9.309391843
ILMN_2715803 9.289380366
ILMN_2762509 11.82143125
ILMN_2496817 10.61538804

Total number of rows: 46632

Table truncated, full table size 1133 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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