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Sample GSM400494 Query DataSets for GSM400494
Status Public on May 08, 2009
Title hippocampus 99
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics tissue: hippocampus
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description hippocampus
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) [email protected]
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.0171
4304921 2.007663
4304922 3.483126
4304923 5.580115
4304925 7.607329
4304927 2.935664
4304928 11.997883
4304929 10.375139
4304930 2.955356
4304931 2.900496
4304932 3.92269
4304933 4.491667
4304934 3.740272
4304935 4.305972
4304937 5.669644
4304938 3.003052
4304939 2.313942
4304940 3.388347
4304941 5.174054
4304942 8.318202

Total number of rows: 1201338

Table truncated, full table size 19837 Kbytes.




Supplementary file Size Download File type/resource
GSM400494.CEL.gz 38.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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