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GEO accession:
Sample GSM410827
Query DataSets for GSM410827
Status
Public on Jul 29, 2009
Title
synthetic_miRNAs_modban_amplified_rep2
Sample type
SRA
Source name
synthetic miRNAs
Organism
Homo sapiens
Characteristics
source: synthetic miRNAs
Extracted molecule
total RNA
Extraction protocol
Modban: The original protocol, as described by Lau et al. 2001, was followed.
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
Illumina Genome Analyzer II
Description
none
Data processing
Sequencing reads were mapped to the reference set of miRNAs using SHRiMP. Reads with 3 or less mismatches were included in the further analysis.
Submission date
Jun 01, 2009
Last update date
Jun 11, 2013
Contact name
Elzo de Wit
Phone
+31 30 2121 800
Organization name
Hubrecht Institute
Street address
Uppsalalaan 8
City
Utrecht
ZIP/Postal code
3584 CT
Country
Netherlands
Platform ID
GPL9115
Series (2)
GSE16373
Limitations and possibilities of small RNA digital gene expression profiling: synthetic miRNA replicates (Illumina)
GSE16374
Limitations and possibilities of small RNA digital gene expression profiling
Relations
BioSample
SAMN02198700
Data table header descriptions
SEQUENCE
COUNT
count
Data table
SEQUENCE
COUNT
hsa-miR-100
26065
hsa-miR-152
24821.5
hsa-miR-379
22627
hsa-miR-181b
21761
hsa-miR-509
21300
hsa-miR-431
19203
hsa-miR-10a
18900
hsa-miR-34c
18636
hsa-miR-7
18310
hsa-miR-21
17674
hsa-miR-506
17255
hsa-miR-542-3p
16838
hsa-miR-199a*
16453
hsa-miR-184
15809
hsa-miR-196b
15321.5
hsa-miR-380-5p
15298
hsa-miR-183
15005
hsa-miR-146b
14576
hsa-let-7c
14470.8333333333
hsa-miR-181a
14328
Total number of rows:
471
Table truncated, full table size
8 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM410827.fa.gz
19.1 Mb
(ftp)
(http)
FA
Processed data included within Sample table
Raw data provided as supplementary file
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