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Sample GSM41509

Query DataSets for GSM41509

Status

Public on Oct 04, 2005

Title

SCARKO d 10 (5)

Sample type

RNA

Source name

testis

Organism

Mus musculus

Extracted molecule

total RNA

Description

RNA from 1 testis from three 10 day old Sertoli cell-selective androgen receptor knockout (SCARKO) mice. Immediately after removal, testis samples were snap-frozen and stored in liquid nitrogen. Before RNA extraction, testis samples were weighed and homogenized in a Dounce homogenizer. Thereafter RNA was isolated with the QIAGEN RNeasy Kit (Chatsworth, CA) according to the manufacturers instructions, encompassing an on-column DNaseI-treatment of the RNA.
Keywords = SCARKO
Keywords = testis
Keywords = spermatogenesis
Keywords = androgens
Keywords = microarray
Keywords = Pem
Keywords = serine protease inhibitor

Submission date

Feb 09, 2005

Last update date

Mar 18, 2009

Contact name

Rekin's Janky

E-mail(s)

[email protected]

Organization name

VIB

Department

Nucleomics Core

Street address

Herestraat 49 Box 816

City

Leuven

ZIP/Postal code

B-3000

Country

Belgium

Platform ID

GPL8321

Series (2)

GSE2259	Testicular gene expression in SCARKO mice during prepuberty
GSE2260	Testicular gene expression in SCARKO mice at day 10

Data table header descriptions
ID_REF
ANALYSIS_NAME	Hybridisation Identification
VALUE	Signal
ABS_CALL	Absolute detection call
DETECTION P-VALUE	Detection P-Value

Data table
ID_REF	ANALYSIS_NAME	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	hyb891	85.1	P	0.000095
AFFX-BioB-M_at	hyb891	146.9	P	0.000044
AFFX-BioB-3_at	hyb891	84.6	P	0.000044
AFFX-BioC-5_at	hyb891	181.6	P	0.000052
AFFX-BioC-3_at	hyb891	192.5	P	0.000052
AFFX-BioDn-5_at	hyb891	307.6	P	0.000044
AFFX-BioDn-3_at	hyb891	866.4	P	0.000044
AFFX-CreX-5_at	hyb891	2037.6	P	0.000052
AFFX-CreX-3_at	hyb891	2604.3	P	0.000044
AFFX-DapX-5_at	hyb891	1.4	A	0.52976
AFFX-DapX-M_at	hyb891	1	A	0.60308
AFFX-DapX-3_at	hyb891	0.4	A	0.804734
AFFX-LysX-5_at	hyb891	1.3	A	0.559354
AFFX-LysX-M_at	hyb891	2.5	A	0.227617
AFFX-LysX-3_at	hyb891	1.8	A	0.0727
AFFX-PheX-5_at	hyb891	0.1	A	0.976071
AFFX-PheX-M_at	hyb891	0.2	A	0.932339
AFFX-PheX-3_at	hyb891	4.3	A	0.156732
AFFX-ThrX-5_at	hyb891	1.8	A	0.559354
AFFX-ThrX-M_at	hyb891	0.8	A	0.485109

Total number of rows: 22690

Table truncated, full table size 760 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM41509.CEL.gz	3.4 Mb	(ftp)(http)	CEL