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Sample GSM418967 Query DataSets for GSM418967
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-36
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 40
histoculture drug response assay: CAPE = 17
histoculture drug response assay: FLOX = 51
histoculture drug response assay: FLIRI = 35
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) [email protected]
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.732351 10.376845
SNP_A-1780618 AA 0.000000 AA 0.620972 10.316947
SNP_A-1780632 AB 0.000000 AB 0.231374 10.546155
SNP_A-1780654 AA 0.000000 AA 0.852019 11.509472
SNP_A-4192495 AA 0.000000 AA 0.626689 11.192737
SNP_A-4192498 AB 0.000000 AB 0.217282 10.693121
SNP_A-1780732 AB 0.000000 AB 0.040780 10.739560
SNP_A-1780848 BB 0.000000 BB -0.532622 10.609854
SNP_A-1780985 BB 0.000000 BB -0.521021 9.343291
SNP_A-1781076 BB 0.000000 BB -0.861958 11.334482
SNP_A-1781249 AA 0.000000 AA 0.571635 11.686324
SNP_A-1781276 AA 0.000000 AA 0.529823 10.677493
SNP_A-1781302 AB 0.000000 AB 0.292845 11.491583
SNP_A-1781510 AA 0.008994 AA 0.736776 11.045121
SNP_A-4192564 BB 0.000000 BB -0.779384 11.362896
SNP_A-1781614 AA 0.000000 AA 0.877463 11.071219
SNP_A-1781764 AB 0.000000 AB 0.107223 12.491408
SNP_A-1781829 AA 0.000000 AA 0.659255 11.944554
SNP_A-1782155 AA 0.000000 AA 0.532541 10.236553
SNP_A-1782305 AB 0.000000 AB 0.221435 11.924916

Total number of rows: 443816

Table truncated, full table size 20946 Kbytes.




Supplementary file Size Download File type/resource
GSM418967_HRCRC-36.CEL.gz 21.8 Mb (ftp)(http) CEL
GSM418967_HRCRC-36.brlmm-p.chp.gz 5.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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