|
| Status |
Public on Oct 01, 2020 |
| Title |
elav-fne_pooled_3b |
| Sample type |
SRA |
| |
|
| Source name |
embryos (14-16h)
|
| Organism |
Drosophila melanogaster |
| Characteristics |
mutant: elav-fne mutant
developmental stage: 14-16h
Sex: male
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
stranded mRNA
Phenol-chloroform RNA purification
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Description |
elav-fne_wt.early.APA_targets.tsv
Segments_split.early.gff
|
| Data processing |
RNA-seq data were analyzed using the RNA-seq module from snakePipes (Bhardwaj V, Manke T. Bioinformatics. 2019) with default parameters.
ELAV iCLIP sequencing reads were processed using iCount (Curk et al. 2019). iCount was used from raw sequence processing to iCLIP peak identification and quantification.
Genome_build: dm6
|
| |
|
| Submission date |
Mar 14, 2020 |
| Last update date |
Oct 01, 2020 |
| Contact name |
Valérie Hilgers |
| Organization name |
MPI of Immunobiology and Epigenetics
|
| Street address |
Stübeweg 51
|
| City |
Freiburg |
| ZIP/Postal code |
79108 |
| Country |
Germany |
| |
|
| Platform ID |
GPL23323 |
| Series (1) |
| GSE146986 |
Exon-activated functional rescue secures neuronal transcript signatures |
|
| Relations |
| BioSample |
SAMN14378982 |
| SRA |
SRX7912726 |
