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Sample GSM44458 Query DataSets for GSM44458
Status Public on Mar 05, 2005
Title M4-GFP negative sorted cells sample #3
Sample type RNA
 
Source name M4-GFP wing disc cells
Organism Drosophila melanogaster
Extracted molecule total RNA
 
Description Approximately 200 E(spl)m4-GFP wing imaginal discs were dissected from late third-instar larvae and collected in ice-cold PBS. Discs were transferred to a 5-ml Falcon tube containing 1 ml of 9X trypsin-EDTA (Sigma)/1X PBS and dissociated at room temperature with gentle rocking for 2 hours and vigorous pipetting every 15 minutes for another hour. Before sorting, the viability of the dissociated cells was confirmed by examining a small trypan blue-stained sample in a hemacytometer. The background fluorescence of wing imaginal disc cells was determined by analyzing w1118 disc cells using FACS. All E(spl)m4-GFP wing disc cells with fluorescence greater than that of w1118 control cells (GFP-positive cells) and 100,000 cells with fluorescence below the w1118 control threshold (GFP-negative cells) were sorted directly into 600 μl of RLT lysis buffer (Qiagen).
Keywords = Proneural
Keywords = PNS
Keywords = PNC
Keywords = SOP
Lot batch = 2004163
 
Submission date Mar 03, 2005
Last update date Sep 08, 2006
Contact name Nick Reeves
E-mail(s) [email protected]
Phone 858-534-6473
URL http://www-biology.ucsd.edu/labs/posakony/
Organization name University of California, San Diego
Department Section of Cellular and Developmental Biology
Lab James Posakony Lab
Street address 9500 Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL72
Series (1)
GSE2359 Sorted wing disc proneural cluster cells

Data table header descriptions
ID_REF
VALUE Scaled signal values (TGT=500)
ABS_CALL Affymetrix absolute call
DETECTION P-VALUE Affymetrix detection p-values

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 23.1 A 0.804734
AFFX-MurIL10_at 30.3 A 0.544587
AFFX-MurIL4_at 11.5 A 0.5
AFFX-MurFAS_at 20.6 A 0.712257
AFFX-BioB-5_at 1545.4 P 0.000581
AFFX-BioB-M_at 2104.1 P 0.000081
AFFX-BioB-3_at 1183.4 P 0.004998
AFFX-BioC-5_at 2696.9 P 0.000581
AFFX-BioC-3_at 1951.9 P 0.00006
AFFX-BioDn-5_at 3960.7 P 0.000044
AFFX-BioDn-3_at 13380.9 P 0.000081
AFFX-CreX-5_at 29351.1 P 0.000044
AFFX-CreX-3_at 44123.6 P 0.000044
AFFX-DapX-5_at 7.7 A 0.794268
AFFX-DapX-M_at 101.4 A 0.0727
AFFX-DapX-3_at 37.1 A 0.60308
AFFX-LysX-5_at 23.7 A 0.51489
AFFX-LysX-M_at 48.1 A 0.659339
AFFX-LysX-3_at 82.4 A 0.41138
AFFX-PheX-5_at 8.7 A 0.921998

Total number of rows: 14010

Table truncated, full table size 362 Kbytes.




Supplementary file Size Download File type/resource
GSM44458.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM44458.EXP.gz 472 b (ftp)(http) EXP
GSM44458.RPT.gz 995 b (ftp)(http) RPT
GSM44458.txt.gz 108.9 Kb (ftp)(http) TXT

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