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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 13, 2009 |
| Title |
hESC-TAFII-1b |
| Sample type |
SRA |
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| Source name |
embryonic stem cells
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| Organism |
Homo sapiens |
| Characteristics |
cell line: H1
chip antibody: TAFII
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
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| Data processing |
Base calling performed with Illumina Genome Analyzer Pipeline Software version 1.0
eland_multi
- Generated using ELAND
- ELAND parameters:
1. Mapping length: 25 bases
2. Maximum number of matches (0 mismatches, 1 mismatch, 2 mismatches): 250,250,250
bed (hg18)
- Generated using a custom perl script
- Input was the eland_multi file.
- Only reads mapping uniquely were retained.
- Read length is 36
- The score field contains the number of copies of the read
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| Submission date |
Sep 01, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Bing Ren |
| E-mail(s) |
[email protected]
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| Organization name |
University of California, San Diego
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| Street address |
9500 Gilman Drive
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platform ID |
GPL9115 |
| Series (1) |
| GSE17917 |
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells |
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| Relations |
| SRA |
SRX011577 |
| BioSample |
SAMN00003904 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM447588_UCSD_30RKDAAXX_7.bed.gz |
42.6 Mb |
(ftp)(http) |
BED |
| GSM447588_UCSD_30RKDAAXX_7_eland_multi.txt.gz |
636.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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