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Sample GSM45585 Query DataSets for GSM45585
Status Public on Apr 21, 2005
Title IFN-KO
Sample type RNA
 
Source name BMDM, IFNgamma treated, KO Vdr -/-
Organism Mus musculus
Extracted molecule total RNA
 
Description KO Vdr -/- mice; Bone marrow derived macrophages (BMDMs); Briefly, femora and tibia of the hind legs were flushed with cold DMEM (Invitrogen) containing 10 % heat-inactivated fetal calf serum (Biowest), 200 mM L-glutamine, and penicillin/streptomycin (Invitrogen). This complete medium was supplemented with M-CSF (50 ng/ml) and bone marrow cells were cultured at 37°C in a humidified 5% CO2 atmosphere for 7 days. Thioglycolate-elicited macrophages were obtained 4 days after the intraperitoneal injection of sterile 4 % thioglycolate medium. Cells were harvested by peritoneal lavage with cold PBS, 1% FCS and were cultured in RPMI 1640 (Invitrogen) including 10 % heat-inactivated fetal calf serum, L-glutamine, and penicillin/streptomycin (P/S). Macrophages were plated at 8 x 104/well in 96-well plates and cultured in P/S-free medium in the presence or absence of IFN-gamma, 1alpha,25(OH)2D3, or both for 24-48 hours.
 
Submission date Mar 21, 2005
Last update date Oct 28, 2005
Contact name Robert Geffers
E-mail(s) [email protected]
Phone +49 531-6181-3058
Organization name HCI - Helmholtz Centre for Infection Research
Department Dep. Molecular Bacteriology
Lab Genome Analytics
Street address Inhoffenstr. 7
City Braunschweig
ZIP/Postal code 38124
Country Germany
 
Platform ID GPL339
Series (1)
GSE2421 IFNgamma and 1a,25(OH)2D3 dependent gene expression in bone marrow derived macrophages

Data table header descriptions
ID_REF
VALUE A measure of the relative abundance of a transcript (MAS5, global scaling to target intensity 150)
ABS_CALL Present (P), Marginal (M) or Absent (A); MAS5
DETECTION P-VALUE value which tells in dependence of R and Tau (see there) the significance of the detection value (The lower the more significant the value). MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1456573_x_at 44.6 A 0.067627
1451203_at 3.8 A 0.989258
1426328_a_at 5.2 A 0.780518
1418713_at 31.3 A 0.398926
1450204_a_at 5.8 A 0.870361
1421667_at 6.9 A 0.466064
1422092_at 29.5 A 0.398926
1424835_at 84.3 A 0.095215
1460262_a_at 127.1 P 0.018555
1425360_at 119.8 A 0.080566
1451816_at 25.8 A 0.466064
1426583_at 62.4 A 0.171387
1452341_at 75.2 M 0.056152
1419851_at 3.4 A 0.953857
1449843_at 10.7 A 0.805420
1452697_at 110.7 P 0.014160
1421975_a_at 14.4 A 0.665527
1455965_at 4.9 A 0.780518
1422326_at 2.1 A 0.997070
1415964_at 2.2 A 0.805420

Total number of rows: 22690

Table truncated, full table size 616 Kbytes.




Supplementary file Size Download File type/resource
GSM45585.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM45585.CHP.gz 5.7 Mb (ftp)(http) CHP
GSM45585.RPT.gz 986 b (ftp)(http) RPT
Processed data provided as supplementary file

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