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GEO accession:
Sample GSM456338
Query DataSets for GSM456338
Status
Public on Dec 31, 2009
Title
Prp17 delta Upf1 delta replicate 1
Sample type
RNA
Source name
Haploid yeast cell
Organism
Saccharomyces cerevisiae
Characteristics
genotype: Prp17 delta Upf1 delta
source: Derived from Open Biosystems; mat A; clone ID 4201 in which the UPF1 gene was deleted with HIS
Extracted molecule
total RNA
Extraction protocol
Hot phenol protocol
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
None
Data processing
Normalized value: probe match minus mismatch, quantile normalized across all our samples
Submission date
Sep 24, 2009
Last update date
Oct 27, 2009
Contact name
matteo Pellegrini
E-mail(s)
[email protected]
Phone
310-825-0012
Organization name
UCLA
Department
MCD Biology
Lab
Matteo Pellegrini
Street address
621 Charles Young Drive South
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL9286
Series (1)
GSE18288
Nonsense Mediated mRNA decay mutes the splicing defects of spliceosome component mutations
Data table header descriptions
ID_REF
VALUE
Normalized value: probe match minus mismatch, quantile normalized across all our samples
Data table
ID_REF
VALUE
1
122
2
98
3
535
4
-228
5
141
6
-75
7
-68
8
-2
9
-63
10
40
11
-2
12
97
13
-15
14
7
15
-63
16
-22
17
-93
18
2
19
78
20
-56
Total number of rows:
2697594
Table truncated, full table size
30666 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM456338_prp17upf1A.CEL.gz
28.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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