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Sample GSM458537 Query DataSets for GSM458537
Status Public on Mar 22, 2010
Title MM653
Sample type SRA
 
Source name giant congental nevus
Organism Homo sapiens
Characteristics cell line: primary giant congental nevus
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) [email protected]
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018398
BioSample SAMN00010665

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 620816
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 373689
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 263386
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 60037
TGAGGTAGTAGGTTGTGTGGTTTTCGTATGCCGTCT 58281
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 53175
TGAGGTAGGAGGTTGTATAGTTTCGTATGCCGTCTT 50634
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 49802
AGCTACATTGTCTGCTGGGTTTCTCGTATGCCGTCT 48588
ACAGTAGTCTGCACATTGGTTATCGTATGCCGTCTT 46719
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 46634
AGCTACATTGTCTGCTGGGTTTTCGTATGCCGTCTT 43157
TGAGGTAGTAGGTTGTATAGTTATCGTATGCCGTCT 40203
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 38483
ACAGTAGTCTGCACATTGGTTTCGTATGCCGTCTTC 35366
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTTTT 33499
AAAAGCTGGGTTGAGAGGGCGATCGTATGCCGTCTT 33121
TGAGGTAGTAGGTTGTGTGGTTATCGTATGCCGTCT 32277
TCTACAGTCCGACGATCTCGTATGCCGTCTTCTGCT 29486
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 28155

Total number of rows: 142374

Table truncated, full table size 5450 Kbytes.




Supplementary data files not provided
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