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Sample GSM458539 Query DataSets for GSM458539
Status Public on Mar 22, 2010
Title D11
Sample type SRA
 
Source name mucosal melanoma
Organism Homo sapiens
Characteristics cell line: secondary mucosal melanoma
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) [email protected]
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018400
BioSample SAMN00010667

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 225295
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 72255
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 20750
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 17820
TGAGGTAGTAGATTGTATAGTTCGTATGCCGTCTTC 16639
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 15262
TGAGGTAGTAGATTGTATAGTTTCTTATGCCGTCTT 10862
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 10844
TGAGGTAGTAGATTGTATAGTTTCGTATGCCTTCTT 10730
CATTGCACTTGTCTCGGTCTGATCGTATGCCGTCTT 10704
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 10693
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 10507
AGCAGCATTGTACAGGGCTATGTCGTATGCCGTCTT 9595
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 9529
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 8969
AGCAGCATTGTACAGGGCTATTCGTATGCCGTCTTC 8163
TGAGGTAGTAGGTTGTATAGTTCGTATGCCGTCTTC 7171
TGGAGAGAAAGGCAGTTCCTGATCGTATGCCGTCTT 6566
TGAGGTAGTAGATTGTATAGTCGTATGCCGTCTTCT 6241
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 6198

Total number of rows: 48963

Table truncated, full table size 1873 Kbytes.




Supplementary data files not provided
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