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Sample GSM4662 Query DataSets for GSM4662
Status Public on Mar 06, 2003
Title 2nd D-Spleen vs D-Liver
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Liver was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Spleen total RNA (Catalog #64044-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.
Liver total RNA (Catalog #64042-1) was purchased from Clontech and used as the starting material. cRNA was made by the double round amplification method.
 
Submission date Mar 06, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE331 Spleen vs Liver - cDNA - Double
GSE6438 Spleen vs Liver - cDNA - Single and Double

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Raw Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 34421.3 65516.8 65517 0.68146 978.892 976 31.2811 32345.7 65516.6 65516 0.741524 2579.52 2573 96.633 -0.0270112 0
2 686.01 1092.76 1092 39.6845 980.012 979 28.0191 3.63265 2243.56 2260 59.7774 2611.8 2609 98.782 -2 0
3 219.735 961.519 959 25.0743 977.309 978.5 29.5859 3.98008 2377.7 2380 144.344 2643.84 2645.5 108.23 0 0
4 264.891 993.115 990.5 31.4125 987.136 985.5 35.6659 4.04949 2301.04 2267.5 120.044 2687.93 2679.5 110.117 0 0
5 262.206 982 974.5 46.4853 982.577 983 35.3044 3.8467 2518.73 2552.5 152.71 2660.99 2657 95.5267 0 0
6 293.464 1525.07 1549 102.841 961.93 960.5 36.3907 109.19 2532.07 2545 182.748 2562.78 2563 124.85 -0.42937 0
7 221.873 959.304 960 28.6109 960.252 959 29.8739 4.51073 2348.74 2358 124.9 2581.45 2579 122.66 0 0
8 241.648 981.889 984 21.6446 973.252 972 32.5364 11.89 2756.7 2770 99.5458 2680.25 2677 101.917 0 0
9 2611.79 6347.19 6532.5 692.821 971.336 969.5 31.545 1529.02 5067.85 5191.5 548.444 2584.5 2577 89.6123 -0.232525 -0.77243133
10 285.906 1595.38 1588 213.346 969.861 968 32.7783 2223.11 6165.13 6163.5 1258.78 2566.3 2560 110.887 0.890736 2.958960944
11 218.422 1009.77 1008 29.3412 1006.43 1002 29.4092 11.4425 2806.31 2818 88.1135 2742.02 2755 92.5564 0 0
12 228.718 1013.75 1008.5 40.6809 1017.43 1016 30.7955 8.58601 2739.29 2724 112.375 2752.67 2749 94.965 0 0
13 87.8816 1038.16 1030 47.4488 1017.26 1015 31.658 29.5868 2846.64 2816 131.269 2792.79 2783 105.768 0 0
14 732.264 2596.36 2600 309.949 1011.45 1009 34.1797 436.878 3275.82 3247 367.077 2774.02 2781 101.002 -0.224307 -0.745131725
15 2245.84 5669.18 3142.5 4635.39 1023 1023 32.5798 1507.89 5238.86 3598 2838.68 2805.3 2809 95.7054 -0.17301 0
16 1046.03 3255.92 2554.5 1280.4 1017.2 1018.5 30.7816 505.535 3410.27 3161 460.544 2784.34 2781 115.365 -0.315794 0
17 163.382 1221.5 1175 179.95 997.665 993 32.9281 41.6958 2597.88 2591 90.482 2748.17 2757 122.594 -0.593111 0
18 364.63 1764.57 1775.5 131.832 970.858 970 23.7165 317.272 2898.04 2888.5 173.974 2597.18 2596 101.261 -0.0604209 -0.200713885
19 2335.45 5796.08 6067 694.687 964.688 962 25.7109 1442.56 4825.36 4920 361.618 2508.28 2499 96.3298 -0.209237 -0.695070269
20 3136.71 7482.27 7322 691.073 961.866 959 27.6925 846.06 3720.31 3728 223.673 2472.31 2470 88.7246 -0.569073 -1.890419587

Total number of rows: 16273

Table truncated, full table size 1953 Kbytes.




Supplementary data files not provided
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