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Sample GSM48624 Query DataSets for GSM48624
Status Public on Apr 21, 2005
Title R-6-oligo-7
Sample type RNA
 
Channel 1
Source name cy3 Liver5
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name cy5 Liver3
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).
 
Submission date Apr 20, 2005
Last update date May 27, 2005
Contact name Kenneth Lyon Phillips
E-mail(s) [email protected]
Phone 919 425 3075
Organization name Paradigm Array Labs
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1976
Series (1)
GSE2458 Cross-platform comparability of microarray data

Data table header descriptions
ID_REF
X the X-coordinate in �m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y the Y-coordinate in �m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. the diameter in �m of the feature-indicator.
F635 Median median feature pixel intensity at wavelength 1 (635 nm).
F635 Mean mean feature pixel intensity at wavelength 1 (635 nm).
F635 SD the standard deviation of the feature pixel intensity at wavelength 1 (635 nm).
B635 Median the median feature background intensity at wavelength 1 (635 nm).
B635 Mean the mean feature background intensity at wavelength 1 (635 nm).
B635 SD
% > B635+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 1 (635 nm).
% > B635+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 1 (635 nm).
F635 % Sat. the percentage of feature pixels at wavelength 1 that are saturated.
F532 Median median feature pixel intensity at wavelength 2 (532 nm).
F532 Mean mean feature pixel intensity at wavelength 2 (532 nm).
F532 SD the standard deviation of the feature intensity at wavelength 2 (532 nm).
B532 Median the median feature background intensity at wavelength 2 (532 nm).
B532 Mean the mean feature background intensity at wavelength 2 (532 nm).
B532 SD the standard deviation of the feature background intensity at wavelength 2 (532 nm).
% > B532+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 2 (532 nm).
% > B532+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 2 (532 nm).
F532 % Sat. the percentage of feature pixels at wavelength 2 that are saturated.
Ratio of Medians
Ratio of Means
Median of Ratios
Mean of Ratios
Ratios SD
Rgn Ratio
Rgn R�
F Pixels the total number of feature pixels.
B Pixels the total number of background pixels.
Sum of Medians the sum of the median intensities for each wavelength, with the median background subtracted.
Sum of Means the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
VALUE log (base 2) transform of the ratio of the medians.
F635 Median - B635 the median feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Median - B532 the median feature pixel intensity at wavelength 2 with the median background subtracted.
F635 Mean - B635 the mean feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Mean - B532 the mean feature pixel intensity at wavelength 2 with the median background subtracted.
Flags the type of flag associated with a feature.

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R� F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
1 3220 4420 160 208 210 43 210 215 46 14 1 0 272 276 42 275 278 42 13 3 0 0.667 0.000 1.020 1.102 3.564 126.700 0.000 208 1107 -5 1 -0.585 -2 -3 0 1 0
16 3440 4420 160 225 234 80 209 215 48 24 6 0 304 321 198 275 277 43 38 16 0 0.552 0.543 0.688 0.695 4.009 0.333 0.263 208 897 45 71 -0.858 16 29 25 46 0
31 3660 4390 160 245 257 79 207 211 48 43 27 0 310 316 63 272 274 44 44 22 0 1.000 1.136 1.375 1.278 3.843 1.730 0.065 208 912 76 94 0.000 38 38 50 44 0
46 3870 4400 160 418 666 507 205 215 81 57 52 0 523 855 611 275 281 85 58 52 0 0.859 0.795 0.815 0.761 2.369 0.808 0.871 208 920 461 1041 -0.219 213 248 461 580 0
61 4100 4410 160 511 800 736 208 218 80 64 57 0 875 1127 970 275 282 84 63 59 0 0.505 0.695 0.626 0.746 2.792 0.723 0.854 208 912 903 1444 -0.986 303 600 592 852 0
76 4310 4400 160 569 673 478 208 213 48 66 59 0 706 806 536 274 276 41 66 60 0 0.836 0.874 0.861 0.939 2.588 0.879 0.870 208 898 793 997 -0.259 361 432 465 532 0
91 4530 4400 160 538 557 344 207 211 47 67 57 0 727 669 384 275 275 42 63 58 0 0.732 0.888 0.927 0.971 2.715 0.886 0.840 208 931 783 744 -0.449 331 452 350 394 0
106 4760 4410 160 466 559 369 206 208 47 62 60 0 605 696 432 273 274 44 69 56 0 0.783 0.835 0.841 0.861 2.688 0.838 0.835 208 903 592 776 -0.353 260 332 353 423 0
121 4970 4410 160 708 787 581 206 209 52 65 60 0 761 856 607 272 274 43 64 58 0 1.027 0.995 1.016 1.109 2.332 0.970 0.894 208 905 991 1165 0.038 502 489 581 584 0
136 5200 4410 160 298 348 160 206 208 50 59 47 0 377 411 151 271 273 42 60 53 0 0.868 1.014 1.028 1.011 2.779 1.067 0.605 208 896 198 282 -0.204 92 106 142 140 0
151 5400 4410 160 242 249 68 206 209 50 41 15 0 299 310 74 268 271 41 43 25 0 1.161 1.024 0.960 1.028 3.049 1.075 0.129 208 948 67 85 0.216 36 31 43 42 0
166 5650 4430 160 209 215 55 209 213 54 16 2 0 303 314 78 269 272 41 44 27 0 0.000 0.133 0.682 0.604 4.231 0.379 0.015 208 887 34 51 NULL 0 34 6 45 0
181 5860 4410 160 409 556 404 210 225 142 52 46 0 443 542 307 267 280 143 51 45 0 1.131 1.258 1.305 1.341 2.566 1.220 0.808 208 854 375 621 0.177 199 176 346 275 0
196 6070 4410 160 1215 1678 1727 211 233 265 56 55 0 1561 2101 2022 267 291 334 56 54 0 0.776 0.800 0.766 0.974 2.926 0.834 0.915 208 924 2298 3301 -0.366 1004 1294 1467 1834 0
211 6290 4410 160 298 353 195 210 220 225 22 8 0 435 596 427 270 283 299 40 22 0 0.533 0.439 0.507 0.606 3.138 0.457 0.688 208 978 253 469 -0.907 88 165 143 326 0
226 6530 4420 160 251 283 105 208 210 47 47 35 0 333 366 117 269 271 46 52 43 0 0.672 0.773 0.884 0.792 3.463 0.846 0.304 208 1156 107 172 -0.574 43 64 75 97 0
2 3240 4650 160 249 290 121 207 212 47 48 36 0 316 366 129 283 291 62 39 31 0 1.273 1.000 0.958 0.996 2.952 0.927 0.465 208 918 75 166 0.348 42 33 83 83 0
17 3450 4640 160 241 244 69 208 215 61 27 7 0 295 306 99 275 284 104 8 1 0 1.650 1.161 1.053 1.102 3.875 0.463 0.425 208 732 53 67 0.722 33 20 36 31 0
32 3670 4640 160 278 342 178 208 214 60 52 41 0 616 700 444 271 282 103 53 50 0 0.203 0.312 0.350 0.425 3.192 0.323 0.614 208 759 415 563 -2.301 70 345 134 429 0
47 3890 4640 160 333 351 151 208 215 67 59 48 0 413 442 175 276 278 56 60 52 0 0.912 0.861 0.915 0.927 2.504 0.839 0.611 208 732 262 309 -0.132 125 137 143 166 0

Total number of rows: 7524

Table truncated, full table size 1182 Kbytes.




Supplementary data files not provided
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