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Sample GSM502424 Query DataSets for GSM502424
Status Public on Jan 19, 2012
Title Sample25_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.648869243 98.87911 3.482264 0.01865136 33
ILMN_1660305 4.864984114 113.5128 3.084486 0 37
ILMN_1792173 5.119114725 158.0274 8.11806 0 26
ILMN_1762337 4.182664344 68.4882 3.263002 0.9067432 41
ILMN_1736007 4.385510102 86.34813 3.026827 0.1922525 40
ILMN_1787689 4.333446299 79.5349 2.557965 0.4648494 46
ILMN_1731507 4.216592379 76.14397 2.642141 0.6327116 34
ILMN_1814316 4.353891683 83.72187 3.610015 0.2596844 46
ILMN_1745607 4.211945948 69.85602 3.049754 0.8852224 35
ILMN_1757454 4.349688345 79.60146 5.101055 0.4648494 40
ILMN_1735045 4.432566744 92.435 3.381138 0.08177906 38
ILMN_1680754 4.313713635 79.11639 3.217404 0.4863701 39
ILMN_1659452 4.265879978 76.07434 2.52421 0.6341463 44
ILMN_1767388 4.484413706 89.00874 2.974199 0.133429 52
ILMN_1673870 4.289938533 77.18689 2.844945 0.5724534 35
ILMN_1675204 4.337458367 84.39102 4.803208 0.2439024 31
ILMN_1755321 4.502703071 88.63347 2.497877 0.1449067 43
ILMN_1698554 4.602334395 95.34538 4.264826 0.04591105 26
ILMN_1805938 4.204274808 72.13512 2.853713 0.8192253 23
ILMN_1676336 5.018077343 144.9369 5.384113 0 34

Total number of rows: 22184

Table truncated, full table size 1132 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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