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Sample GSM502442 Query DataSets for GSM502442
Status Public on Jan 19, 2012
Title Sample43_phenotype1_race3
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: atherosclerosis
ethnicity: African-American
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Female peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software.
 
Submission date Jan 29, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) [email protected]
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL6104
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1809034 4.92816994 160.686 5.315523 0 43
ILMN_1660305 4.8824114 137.0489 5.720601 0 28
ILMN_1792173 5.209668455 195.1901 6.982906 0 41
ILMN_1762337 4.169979298 68.05824 2.287162 0.8712446 52
ILMN_1736007 4.3314795 80.75336 3.000629 0.3376252 45
ILMN_1787689 4.33529049 81.29008 2.302973 0.3204578 42
ILMN_1731507 4.214168483 72.8902 2.932261 0.6924177 40
ILMN_1814316 4.301313884 77.23386 3.389428 0.4949929 40
ILMN_1745607 4.354463234 85.09517 2.648563 0.18598 48
ILMN_1757454 4.43131099 91.6983 3.169199 0.06008584 53
ILMN_1735045 4.342025821 81.72488 2.578772 0.304721 36
ILMN_1680754 4.318549027 81.63771 2.323238 0.3104435 47
ILMN_1659452 4.294645181 75.96247 3.077993 0.5608011 41
ILMN_1767388 4.512781084 93.98775 3.205102 0.03147353 41
ILMN_1673870 4.226176876 69.35507 3.393795 0.8283262 26
ILMN_1675204 4.329175143 82.14385 2.194088 0.2889843 41
ILMN_1755321 4.518625719 96.1792 3.694323 0.01573677 41
ILMN_1698554 4.711598665 114.8758 4.435009 0 49
ILMN_1805938 4.234634658 72.95487 3.293833 0.6909871 35
ILMN_1676336 4.948539576 151.2394 5.577271 0 40

Total number of rows: 22184

Table truncated, full table size 1130 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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