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Sample GSM51909

Query DataSets for GSM51909

Status

Public on Jul 19, 2005

Title

1287_RNT1_5_2

Sample type

RNA

Source name

Rnt1 knockout BMA64

Organism

Saccharomyces cerevisiae

Extracted molecule

total RNA

Description

Strain background is BMA64 with RNT1 gene deleted with the TRP marker Media is SD -Trp (synthetic dextrose minimal media missing tryptophan) Cells were grown until midlog and harvested at OD600=0.4; MAS5 (Statistical Algorithm) Scaling:All Probe Sets Target Signal 500;Normalization:All Probe Sets; Alpha1=0.04; Alpha2=0.06; Tau=0.015

Submission date

May 19, 2005

Last update date

May 29, 2005

Contact name

Guillaume Francois Chanfreau

E-mail(s)

[email protected]

Phone

1-310-825-4399

Organization name

UCLA

Department

Chemistry and Biochemistry

Street address

607 Charles E. Young Drive East

City

Los Angeles

State/province

ZIP/Postal code

90095-1569

Country

USA

Platform ID

GPL90

Series (1)

GSE2683

Rnt1 KO Sc and Wild-type BMA64 Sc

Data table header descriptions
ID_REF
VALUE	MAS5 SA Signal
ABS_CALL	MAS5 SA Detection
DETECTION P-VALUE	MAS5 SA Detection P-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	3.9	A	0.995516
AFFX-MurIL10_at	3.4	A	0.953518
AFFX-MurIL4_at	1.6	A	0.99382
AFFX-MurFAS_at	1.7	A	0.993133
AFFX-BioB-5_at	221.4	P	0.009337
AFFX-BioB-M_at	249.7	P	0.000225
AFFX-BioB-3_at	248	P	0.000662
AFFX-BioC-5_at	442	P	0.000127
AFFX-BioC-3_at	448.7	P	0.00007
AFFX-BioDn-5_at	346.8	P	0.000044
AFFX-BioDn-3_at	3367.4	P	0.000044
AFFX-CreX-5_at	4289.5	P	0.000044
AFFX-CreX-3_at	6806.5	P	0.000044
AFFX-BioB-5_st	32.4	A	0.617411
AFFX-BioB-M_st	5.3	A	0.941588
AFFX-BioB-3_st	6.7	A	0.910522
AFFX-BioC-5_st	34.8	A	0.737173
AFFX-BioC-3_st	3.3	A	0.910522
AFFX-BioDn-5_st	17.4	A	0.574038
AFFX-BioDn-3_st	64	A	0.165861

Total number of rows: 9335

Table truncated, full table size 227 Kbytes.

Supplementary data files not provided