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Sample GSM5319 Query DataSets for GSM5319
Status Public on Apr 02, 2003
Title S12-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S12-P1
mAdb experiment ID: 25407
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0077483 1 1 1 774 280 175 83 903 231 352 101 0 1.018 0.0077483
159763 0.1872393 2 1 1 1437 392 168 98 1115 247 343 99 0 1.539 0.1872393
159764 0.2335043 3 1 1 1580 451 159 119 1068 220 291 93 0 1.712 0.2335043
159765 0.5590683 4 1 1 1494 407 128 68 648 144 295 88 0 3.623 0.5590683
159766 -0.0268723 1 2 1 450 157 164 78 644 162 359 102 0 0.940 -0.0268723
159767 0.1565493 2 2 1 803 204 172 82 757 159 345 92 0 1.434 0.1565493
159768 0.0350293 3 2 1 844 354 131 81 897 259 281 90 0 1.084 0.0350293
159769 -0.1402613 4 2 1 471 125 116 64 749 165 290 85 0 0.724 -0.1402613
159770 -0.2069083 1 3 1 357 156 170 354 637 202 355 106 0 0.621 -0.2069083
159771 0.1335393 2 3 1 610 189 180 84 633 172 337 96 0 1.360 0.1335393
159772 -0.0241093 3 3 1 323 158 133 83 476 162 288 89 0 0.946 -0.0241093
159773 -0.1951793 4 3 1 278 117 122 64 518 143 289 84 0 0.638 -0.1951793
159774 0.5200903 1 4 1 3638 933 168 79 1320 346 339 100 0 3.312 0.5200903
159775 -0.0931263 2 4 1 683 203 182 89 917 193 336 94 0 0.807 -0.0931263
159776 -0.2403323 3 4 1 595 2348 136 226 1035 3433 288 83 0 0.575 -0.2403323
159777 -0.0535483 4 4 1 286 136 117 66 461 149 282 84 0 0.884 -0.0535483
159778 0.2278873 1 5 1 710 239 172 88 645 166 347 101 0 1.690 0.2278873
159779 -0.0685423 2 5 1 462 138 194 90 622 138 328 92 0 0.854 -0.0685423
159780 -0.4056073 3 5 1 332 147 127 70 769 221 280 86 0 0.393 -0.4056073
159781 0.0207753 4 5 1 415 156 136 87 583 140 334 121 0 1.049 0.0207753

Total number of rows: 9128

Table truncated, full table size 658 Kbytes.




Supplementary data files not provided
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