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Sample GSM5330 Query DataSets for GSM5330
Status Public on Apr 02, 2003
Title S20-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S20-M1
mAdb experiment ID: 25419
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1693803 1 1 1 2506 930 168 294 1820 543 210 100 0 1.477 0.1693803
159763 0.1451963 2 1 1 3335 868 146 81 2516 570 195 78 0 1.397 0.1451963
159764 -0.0772753 3 1 1 2705 932 163 84 3302 1032 215 75 0 0.837 -0.0772753
159765 0.5403293 4 1 1 2576 465 167 111 951 209 245 79 0 3.470 0.5403293
159766 0.1360863 1 2 1 918 290 155 90 771 202 204 77 0 1.368 0.1360863
159767 0.0603203 2 2 1 1546 324 143 82 1440 294 198 76 0 1.149 0.0603203
159768 0.1146113 3 2 1 1543 1101 154 81 1303 374 218 72 0 1.302 0.1146113
159769 0.0220163 4 2 1 1752 427 169 100 1781 482 251 82 0 1.052 0.0220163
159770 -0.0680343 1 3 1 701 328 146 86 852 319 192 76 0 0.855 -0.0680343
159771 -0.0315173 2 3 1 701 195 136 78 824 167 206 72 0 0.930 -0.0315173
159772 0.1245043 3 3 1 502 202 143 82 487 172 213 74 0 1.332 0.1245043
159773 -0.0141253 4 3 1 551 270 173 235 656 207 259 133 0 0.968 -0.0141253
159774 0.3483053 1 4 1 6199 1599 151 849 2956 576 198 218 0 2.230 0.3483053
159775 -0.0506103 2 4 1 1179 337 138 82 1396 320 207 79 0 0.890 -0.0506103
159776 0.0659533 3 4 1 533 172 162 96 549 174 225 78 0 1.164 0.0659533
159777 0.0542303 4 4 1 541 224 170 97 584 190 251 87 0 1.133 0.0542303
159778 0.1251563 1 5 1 739 277 146 558 646 220 194 152 0 1.334 0.1251563
159779 -0.0172773 2 5 1 518 159 159 92 594 146 214 80 0 0.961 -0.0172773
159780 -0.6090653 3 5 1 444 194 162 87 1396 400 232 82 0 0.246 -0.6090653
159781 0.0457143 4 5 1 456 185 161 97 519 175 249 106 0 1.111 0.0457143

Total number of rows: 9128

Table truncated, full table size 665 Kbytes.




Supplementary data files not provided
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