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Sample GSM5338 Query DataSets for GSM5338
Status Public on Apr 02, 2003
Title S23-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S23-M1
mAdb experiment ID: 25428
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0248963 1 1 1 3430 656 440 117 3579 987 669 156 0 1.059 0.0248963
159763 0.2530963 2 1 1 6840 2116 388 345 4226 947 515 151 0 1.791 0.2530963
159764 0.1303343 3 1 1 4505 1386 333 105 3587 941 404 119 0 1.350 0.1303343
159765 0.2294263 4 1 1 2285 380 280 90 1578 349 360 102 0 1.696 0.2294263
159766 -0.0762383 1 2 1 1532 626 445 145 1992 978 658 154 0 0.839 -0.0762383
159767 0.0722503 2 2 1 2060 535 380 114 1958 613 493 138 0 1.181 0.0722503
159768 0.0972573 3 2 1 2302 620 314 103 2020 402 383 117 0 1.251 0.0972573
159769 0.0060383 4 2 1 3095 700 296 105 3193 726 348 102 0 1.014 0.0060383
159770 -0.2604283 1 3 1 1433 1136 445 159 2517 1792 663 331 0 0.549 -0.2604283
159771 0.3300083 2 3 1 3499 1068 380 113 1993 521 490 140 0 2.138 0.3300083
159772 -0.1180453 3 3 1 795 540 306 98 1025 717 364 109 0 0.762 -0.1180453
159773 0.0888453 4 3 1 1209 307 281 92 1140 445 361 102 0 1.227 0.0888453
159774 0.1245043 1 4 1 4886 1052 442 125 4098 864 660 153 0 1.332 0.1245043
159775 -0.1118213 2 4 1 2032 497 407 115 2678 737 512 132 0 0.773 -0.1118213
159776 0.0021663 3 4 1 1072 337 330 102 1155 428 394 111 0 1.005 0.0021663
159777 -0.0381053 4 4 1 1040 478 289 92 1201 471 356 111 0 0.916 -0.0381053
159778 0.0236643 1 5 1 1196 773 429 132 1396 808 648 152 0 1.056 0.0236643
159779 -0.0649973 2 5 1 1685 610 397 114 2043 722 502 138 0 0.861 -0.0649973
159780 -0.0409593 3 5 1 1420 879 332 97 1633 976 401 109 0 0.910 -0.0409593
159781 -0.0772753 4 5 1 1092 542 306 214 1340 481 372 313 0 0.837 -0.0772753

Total number of rows: 9128

Table truncated, full table size 677 Kbytes.




Supplementary data files not provided
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