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Sample GSM5380 Query DataSets for GSM5380
Status Public on Apr 02, 2003
Title S45-PN1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S45-PN1
mAdb experiment ID: 25480
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1535103 1 1 1 1018 294 164 55 898 220 450 129 0 1.424 0.1535103
159763 0.3839953 2 1 1 1711 232 129 125 848 188 360 682 0 2.421 0.3839953
159764 0.3995013 3 1 1 1856 525 136 304 879 258 367 225 0 2.509 0.3995013
159765 -0.0777943 4 1 1 473 99 144 42 632 121 338 98 0 0.836 -0.0777943
159766 0.0733523 1 2 1 530 129 156 48 666 162 430 114 0 1.184 0.0733523
159767 0.1510633 2 2 1 672 157 130 42 642 144 356 99 0 1.416 0.1510633
159768 0.0965623 3 2 1 912 225 138 329 826 175 363 241 0 1.249 0.0965623
159769 0.1749323 4 2 1 1063 213 144 42 786 154 327 96 0 1.496 0.1749323
159770 -0.1924653 1 3 1 531 132 169 109 874 198 453 131 0 0.642 -0.1924653
159771 0.2041203 2 3 1 666 156 124 46 602 139 349 97 0 1.600 0.2041203
159772 -0.1348963 3 3 1 348 93 140 82 583 138 371 131 0 0.733 -0.1348963
159773 -0.3555613 4 3 1 388 85 143 43 736 134 321 94 0 0.441 -0.3555613
159774 0.4524003 1 4 1 1895 606 146 68 845 195 384 106 0 2.834 0.4524003
159775 -0.0952843 2 4 1 786 183 125 48 957 181 342 98 0 0.803 -0.0952843
159776 -0.0555173 3 4 1 381 82 136 66 566 112 358 104 0 0.880 -0.0555173
159777 -0.1012753 4 4 1 346 101 134 44 507 139 307 96 0 0.792 -0.1012753
159778 0.0017343 1 5 1 437 118 136 44 589 131 365 103 0 1.004 0.0017343
159779 -0.0920513 2 5 1 517 100 128 42 705 150 346 99 0 0.809 -0.0920513
159780 -0.3169533 3 5 1 311 85 138 72 623 145 355 140 0 0.482 -0.3169533
159781 4 5 1 224 93 147 42 418 134 332 92 -50 0.669 -0.1745743

Total number of rows: 9128

Table truncated, full table size 664 Kbytes.




Supplementary data files not provided
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